Strain Fitness in Escherichia coli ECRC100 around OKFHMN_27700

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntpntB and tqsA are separated by 24 nucleotidestqsA and mdtJ are separated by 411 nucleotidesmdtJ and mdtI overlap by 14 nucleotides OKFHMN_27695: pntB - Re/Si-specific NAD(P)(+) transhydrogenase subunit beta, at 5,334,259 to 5,335,647 pntB OKFHMN_27700: tqsA - AI-2 transporter TqsA, at 5,335,672 to 5,336,706 tqsA OKFHMN_27705: mdtJ - multidrug/spermidine efflux SMR transporter subunit MdtJ, at 5,337,118 to 5,337,483 mdtJ OKFHMN_27710: mdtI - multidrug/spermidine efflux SMR transporter subunit MdtI, at 5,337,470 to 5,337,799 mdtI Position (kb) 5335 5336 5337Strain fitness (log2 ratio) -2 -1 0 1at 5334.804 kb on + strand, within pntBat 5334.836 kb on + strand, within pntBat 5334.960 kb on + strand, within pntBat 5334.960 kb on + strand, within pntBat 5335.038 kb on + strand, within pntBat 5335.320 kb on + strand, within pntBat 5335.320 kb on + strand, within pntBat 5335.321 kb on - strand, within pntBat 5335.328 kb on + strand, within pntBat 5335.328 kb on + strand, within pntBat 5335.549 kb on + strandat 5335.963 kb on - strand, within tqsAat 5336.004 kb on - strand, within tqsAat 5336.276 kb on - strand, within tqsAat 5336.328 kb on - strand, within tqsAat 5336.406 kb on + strand, within tqsAat 5336.662 kb on - strandat 5336.738 kb on - strandat 5336.903 kb on + strandat 5336.932 kb on + strandat 5337.165 kb on + strand, within mdtJ

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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5,334,804 + pntB OKFHMN_27695 0.39 -0.5
5,334,836 + pntB OKFHMN_27695 0.42 +0.5
5,334,960 + pntB OKFHMN_27695 0.50 +0.6
5,334,960 + pntB OKFHMN_27695 0.50 -2.5
5,335,038 + pntB OKFHMN_27695 0.56 -1.5
5,335,320 + pntB OKFHMN_27695 0.76 +0.5
5,335,320 + pntB OKFHMN_27695 0.76 -0.4
5,335,321 - pntB OKFHMN_27695 0.76 -0.4
5,335,328 + pntB OKFHMN_27695 0.77 -1.6
5,335,328 + pntB OKFHMN_27695 0.77 -1.0
5,335,549 + -0.9
5,335,963 - tqsA OKFHMN_27700 0.28 -1.3
5,336,004 - tqsA OKFHMN_27700 0.32 +0.7
5,336,276 - tqsA OKFHMN_27700 0.58 +0.1
5,336,328 - tqsA OKFHMN_27700 0.63 +0.5
5,336,406 + tqsA OKFHMN_27700 0.71 +0.3
5,336,662 - -1.6
5,336,738 - +0.5
5,336,903 + -0.4
5,336,932 + +0.4
5,337,165 + mdtJ OKFHMN_27705 0.13 +1.4

Or see this region's nucleotide sequence