Strain Fitness in Escherichia coli ECRC100 around OKFHMN_27600

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntmalI and hdhA are separated by 111 nucleotideshdhA and uidR are separated by 228 nucleotides OKFHMN_27595: malI - mal regulon transcriptional regulator MalI, at 5,311,611 to 5,312,639 malI OKFHMN_27600: hdhA - 7-alpha-hydroxysteroid dehydrogenase, at 5,312,751 to 5,313,518 hdhA OKFHMN_27605: uidR - DNA-binding transcriptional regulator UidR, at 5,313,747 to 5,314,337 uidR Position (kb) 5312 5313 5314Strain fitness (log2 ratio) -3 -2 -1 0 1at 5312.637 kb on + strandat 5312.816 kb on + strandat 5312.876 kb on + strand, within hdhAat 5313.002 kb on + strand, within hdhAat 5313.718 kb on + strandat 5314.236 kb on + strand, within uidRat 5314.459 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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5,312,637 + -3.2
5,312,816 + -0.4
5,312,876 + hdhA OKFHMN_27600 0.16 -0.0
5,313,002 + hdhA OKFHMN_27600 0.33 -0.4
5,313,718 + +1.3
5,314,236 + uidR OKFHMN_27605 0.83 +0.1
5,314,459 + -2.8

Or see this region's nucleotide sequence