Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt dtpA and OKFHMN_27520 are separated by 282 nucleotides OKFHMN_27520 and nth are separated by 127 nucleotides nth and rsxE overlap by 1 nucleotides rsxE and rsxG are separated by 3 nucleotides
OKFHMN_27515: dtpA - dipeptide/tripeptide permease DtpA, at 5,296,422 to 5,297,924
dtpA
OKFHMN_27520: OKFHMN_27520 - hypothetical protein, at 5,298,207 to 5,298,407
_27520
OKFHMN_27525: nth - endonuclease III, at 5,298,535 to 5,299,170
nth
OKFHMN_27530: rsxE - electron transport complex subunit RsxE, at 5,299,170 to 5,299,865
rsxE
OKFHMN_27535: rsxG - electron transport complex subunit RsxG, at 5,299,869 to 5,300,489
rsxG
Position (kb) 5298
5299
5300 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5297.579 kb on - strand, within dtpA at 5297.652 kb on - strand, within dtpA at 5297.652 kb on - strand, within dtpA at 5297.655 kb on + strand, within dtpA at 5297.855 kb on - strand at 5297.981 kb on - strand at 5298.005 kb on - strand at 5298.036 kb on + strand at 5298.371 kb on - strand, within OKFHMN_27520 at 5298.736 kb on - strand, within nth at 5298.871 kb on - strand, within nth at 5298.927 kb on - strand, within nth at 5299.030 kb on - strand, within nth at 5299.256 kb on - strand, within rsxE at 5299.372 kb on - strand, within rsxE at 5299.538 kb on + strand, within rsxE at 5299.562 kb on + strand, within rsxE at 5300.142 kb on + strand, within rsxG
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 5,297,579 - dtpA OKFHMN_27515 0.77 +2.1 5,297,652 - dtpA OKFHMN_27515 0.82 +0.6 5,297,652 - dtpA OKFHMN_27515 0.82 +2.3 5,297,655 + dtpA OKFHMN_27515 0.82 +0.8 5,297,855 - +0.2 5,297,981 - +0.8 5,298,005 - +0.5 5,298,036 + +0.0 5,298,371 - OKFHMN_27520 0.82 +0.1 5,298,736 - nth OKFHMN_27525 0.32 -0.2 5,298,871 - nth OKFHMN_27525 0.53 +0.6 5,298,927 - nth OKFHMN_27525 0.62 -0.2 5,299,030 - nth OKFHMN_27525 0.78 +3.4 5,299,256 - rsxE OKFHMN_27530 0.12 -1.2 5,299,372 - rsxE OKFHMN_27530 0.29 +0.3 5,299,538 + rsxE OKFHMN_27530 0.53 -3.6 5,299,562 + rsxE OKFHMN_27530 0.56 -0.3 5,300,142 + rsxG OKFHMN_27535 0.44 -0.4
Or see this region's nucleotide sequence