Strain Fitness in Escherichia coli ECRC100 around OKFHMN_27485

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntslyA and slyB are separated by 46 nucleotidesslyB and anmK are separated by 272 nucleotidesanmK and mliC are separated by 103 nucleotidesmliC and pdxH are separated by 58 nucleotides OKFHMN_27475: slyA - transcriptional regulator SlyA, at 5,289,870 to 5,290,304 slyA OKFHMN_27480: slyB - outer membrane lipoprotein SlyB, at 5,290,351 to 5,290,818 slyB OKFHMN_27485: anmK - anhydro-N-acetylmuramic acid kinase, at 5,291,091 to 5,292,200 anmK OKFHMN_27490: mliC - C-type lysozyme inhibitor, at 5,292,304 to 5,292,627 mliC OKFHMN_27495: pdxH - pyridoxamine 5'-phosphate oxidase, at 5,292,686 to 5,293,342 pdxH Position (kb) 5291 5292 5293Strain fitness (log2 ratio) -2 -1 0 1 2at 5290.456 kb on - strand, within slyBat 5290.762 kb on - strand, within slyBat 5290.787 kb on - strandat 5290.874 kb on + strandat 5290.884 kb on - strandat 5290.900 kb on - strandat 5290.900 kb on - strandat 5290.900 kb on - strandat 5290.915 kb on + strandat 5290.929 kb on - strandat 5290.953 kb on + strandat 5290.990 kb on - strandat 5291.000 kb on + strandat 5291.000 kb on + strandat 5291.001 kb on - strandat 5291.047 kb on + strandat 5291.090 kb on + strandat 5291.233 kb on + strand, within anmKat 5291.234 kb on - strand, within anmKat 5291.362 kb on + strand, within anmKat 5292.062 kb on + strand, within anmKat 5292.438 kb on + strand, within mliC

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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5,290,456 - slyB OKFHMN_27480 0.22 -0.1
5,290,762 - slyB OKFHMN_27480 0.88 +0.3
5,290,787 - -0.3
5,290,874 + +0.1
5,290,884 - +0.6
5,290,900 - +1.1
5,290,900 - +1.1
5,290,900 - -2.5
5,290,915 + +0.5
5,290,929 - +0.4
5,290,953 + -0.8
5,290,990 - -0.1
5,291,000 + +0.2
5,291,000 + +0.3
5,291,001 - +2.3
5,291,047 + +0.5
5,291,090 + -0.1
5,291,233 + anmK OKFHMN_27485 0.13 +0.3
5,291,234 - anmK OKFHMN_27485 0.13 +0.4
5,291,362 + anmK OKFHMN_27485 0.24 -0.7
5,292,062 + anmK OKFHMN_27485 0.87 +0.8
5,292,438 + mliC OKFHMN_27490 0.41 +1.1

Or see this region's nucleotide sequence