Strain Fitness in Escherichia coli ECRC100 around OKFHMN_27385

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntpunR and purR overlap by 4 nucleotidespurR and ynhF are separated by 298 nucleotidesynhF and ydhP are separated by 165 nucleotides OKFHMN_27380: punR - DNA-binding transcriptional activator PunR, at 5,270,911 to 5,271,843 punR OKFHMN_27385: purR - HTH-type transcriptional repressor PurR, at 5,271,840 to 5,272,865 purR OKFHMN_27395: ynhF - stress response protein YnhF, at 5,273,164 to 5,273,253 ynhF OKFHMN_27400: ydhP - Inner membrane transport protein YdhP, at 5,273,419 to 5,274,588 ydhP Position (kb) 5271 5272 5273Strain fitness (log2 ratio) -2 -1 0 1at 5270.910 kb on + strandat 5270.955 kb on + strandat 5271.528 kb on + strand, within punRat 5271.534 kb on + strand, within punRat 5271.537 kb on + strand, within punRat 5271.675 kb on - strand, within punRat 5271.680 kb on + strand, within punRat 5271.680 kb on + strand, within punRat 5271.941 kb on + strandat 5271.942 kb on - strandat 5272.266 kb on - strand, within purRat 5272.352 kb on - strand, within purRat 5272.547 kb on - strand, within purRat 5272.648 kb on + strand, within purRat 5272.733 kb on - strand, within purRat 5273.202 kb on + strand, within ynhFat 5273.552 kb on + strand, within ydhPat 5273.576 kb on + strand, within ydhPat 5273.697 kb on + strand, within ydhP

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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5,270,910 + +0.1
5,270,955 + -0.0
5,271,528 + punR OKFHMN_27380 0.66 +0.8
5,271,534 + punR OKFHMN_27380 0.67 -1.7
5,271,537 + punR OKFHMN_27380 0.67 -0.4
5,271,675 - punR OKFHMN_27380 0.82 -0.3
5,271,680 + punR OKFHMN_27380 0.82 -0.9
5,271,680 + punR OKFHMN_27380 0.82 +1.1
5,271,941 + -2.3
5,271,942 - -0.5
5,272,266 - purR OKFHMN_27385 0.42 -0.2
5,272,352 - purR OKFHMN_27385 0.50 -0.1
5,272,547 - purR OKFHMN_27385 0.69 -0.3
5,272,648 + purR OKFHMN_27385 0.79 -0.5
5,272,733 - purR OKFHMN_27385 0.87 +1.7
5,273,202 + ynhF OKFHMN_27395 0.42 +0.9
5,273,552 + ydhP OKFHMN_27400 0.11 +0.2
5,273,576 + ydhP OKFHMN_27400 0.13 -0.5
5,273,697 + ydhP OKFHMN_27400 0.24 +1.4

Or see this region's nucleotide sequence