Strain Fitness in Escherichia coli ECRC100 around OKFHMN_27195

Experiment: L-Arabinose

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntydiF and aroD are separated by 144 nucleotidesaroD and ydiB are separated by 30 nucleotidesydiB and uhpC are separated by 11 nucleotides OKFHMN_27190: ydiF - Acetate CoA-transferase YdiF, at 5,233,524 to 5,235,119 ydiF OKFHMN_27195: aroD - 3-dehydroquinate dehydratase, at 5,235,264 to 5,236,022 aroD OKFHMN_27200: ydiB - quinate/shikimate dehydrogenase, at 5,236,053 to 5,236,919 ydiB OKFHMN_27205: uhpC - MFS transporter, at 5,236,931 to 5,238,196 uhpC Position (kb) 5235 5236 5237Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 5234.343 kb on + strand, within ydiFat 5234.375 kb on + strand, within ydiFat 5234.506 kb on + strand, within ydiFat 5234.960 kb on - strandat 5235.585 kb on - strand, within aroDat 5236.280 kb on + strand, within ydiBat 5236.722 kb on + strand, within ydiBat 5236.805 kb on - strand, within ydiB

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
remove
5,234,343 + ydiF OKFHMN_27190 0.51 -0.6
5,234,375 + ydiF OKFHMN_27190 0.53 +0.4
5,234,506 + ydiF OKFHMN_27190 0.62 -0.0
5,234,960 - +1.4
5,235,585 - aroD OKFHMN_27195 0.42 -6.6
5,236,280 + ydiB OKFHMN_27200 0.26 -0.1
5,236,722 + ydiB OKFHMN_27200 0.77 -0.8
5,236,805 - ydiB OKFHMN_27200 0.87 +0.1

Or see this region's nucleotide sequence