Strain Fitness in Escherichia coli ECRC100 around OKFHMN_27040

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntpfkB and ydiY are separated by 286 nucleotidesydiY and yniD are separated by 52 nucleotidesyniD and OKFHMN_27050 are separated by 174 nucleotides OKFHMN_27035: pfkB - 6-phosphofructokinase II, at 5,203,407 to 5,204,336 pfkB OKFHMN_27040: ydiY - Uncharacterized protein YdiY, at 5,204,623 to 5,205,381 ydiY OKFHMN_27045: yniD - Uncharacterized protein YniD, at 5,205,434 to 5,205,541 yniD OKFHMN_27050: OKFHMN_27050 - ShET2 enterotoxin, N-terminal region, at 5,205,716 to 5,207,614 _27050 Position (kb) 5204 5205 5206Strain fitness (log2 ratio) -1 0 1at 5203.785 kb on - strand, within pfkBat 5204.053 kb on - strand, within pfkBat 5204.328 kb on - strandat 5204.877 kb on + strand, within ydiYat 5204.881 kb on - strand, within ydiYat 5205.109 kb on + strand, within ydiYat 5205.112 kb on - strand, within ydiYat 5205.251 kb on + strand, within ydiYat 5205.264 kb on + strand, within ydiYat 5205.697 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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5,203,785 - pfkB OKFHMN_27035 0.41 -0.9
5,204,053 - pfkB OKFHMN_27035 0.69 +0.8
5,204,328 - +1.0
5,204,877 + ydiY OKFHMN_27040 0.33 +0.1
5,204,881 - ydiY OKFHMN_27040 0.34 -0.0
5,205,109 + ydiY OKFHMN_27040 0.64 -0.5
5,205,112 - ydiY OKFHMN_27040 0.64 +0.2
5,205,251 + ydiY OKFHMN_27040 0.83 +0.4
5,205,264 + ydiY OKFHMN_27040 0.84 -0.0
5,205,697 - +0.8

Or see this region's nucleotide sequence