Strain Fitness in Escherichia coli ECRC100 around OKFHMN_26960

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntnadE and osmE are separated by 201 nucleotidesosmE and chbB are separated by 299 nucleotideschbB and chbC are separated by 84 nucleotides OKFHMN_26950: nadE - ammonia-dependent NAD(+) synthetase, at 5,187,622 to 5,188,449 nadE OKFHMN_26955: osmE - osmotically-inducible lipoprotein OsmE, at 5,188,651 to 5,188,989 osmE OKFHMN_26960: chbB - PTS N,N'-diacetylchitobiose transporter subunit IIB, at 5,189,289 to 5,189,609 chbB OKFHMN_26965: chbC - PTS N,N'-diacetylchitobiose transporter subunit IIC, at 5,189,694 to 5,191,052 chbC Position (kb) 5189 5190Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5188.608 kb on - strandat 5188.623 kb on - strandat 5188.640 kb on + strandat 5188.640 kb on + strandat 5188.641 kb on - strandat 5188.650 kb on + strandat 5188.745 kb on + strand, within osmEat 5188.897 kb on + strand, within osmEat 5189.131 kb on + strandat 5189.163 kb on + strandat 5189.288 kb on + strandat 5189.474 kb on + strand, within chbBat 5189.950 kb on + strand, within chbCat 5190.086 kb on + strand, within chbCat 5190.229 kb on + strand, within chbCat 5190.522 kb on + strand, within chbC

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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5,188,608 - +1.8
5,188,623 - +0.5
5,188,640 + -2.9
5,188,640 + -2.2
5,188,641 - +0.4
5,188,650 + -0.0
5,188,745 + osmE OKFHMN_26955 0.28 +0.7
5,188,897 + osmE OKFHMN_26955 0.73 +0.5
5,189,131 + +2.7
5,189,163 + -2.4
5,189,288 + -0.4
5,189,474 + chbB OKFHMN_26960 0.58 -1.2
5,189,950 + chbC OKFHMN_26965 0.19 -3.7
5,190,086 + chbC OKFHMN_26965 0.29 +0.7
5,190,229 + chbC OKFHMN_26965 0.39 -0.8
5,190,522 + chbC OKFHMN_26965 0.61 -0.7

Or see this region's nucleotide sequence