Strain Fitness in Escherichia coli ECRC100 around OKFHMN_26755

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntydjK and ydjJ are separated by 16 nucleotidesydjJ and ydjI are separated by 20 nucleotidesydjI and rbsK are separated by 4 nucleotides OKFHMN_26750: ydjK - Putative metabolite transport protein YdjK, at 5,148,588 to 5,149,967 ydjK OKFHMN_26755: ydjJ - Uncharacterized zinc-type alcohol dehydrogenase-like protein YdjJ, at 5,149,984 to 5,151,027 ydjJ OKFHMN_26760: ydjI - Uncharacterized protein YdjI, at 5,151,048 to 5,151,884 ydjI OKFHMN_26765: rbsK - sugar kinase, at 5,151,889 to 5,152,821 rbsK Position (kb) 5149 5150 5151 5152Strain fitness (log2 ratio) -2 -1 0 1at 5149.002 kb on + strand, within ydjKat 5149.002 kb on + strand, within ydjKat 5149.004 kb on + strand, within ydjKat 5149.004 kb on + strand, within ydjKat 5149.686 kb on + strand, within ydjKat 5149.686 kb on + strand, within ydjKat 5149.688 kb on + strand, within ydjKat 5149.716 kb on + strand, within ydjKat 5149.793 kb on + strand, within ydjKat 5149.807 kb on - strand, within ydjKat 5149.829 kb on + strand, within ydjKat 5150.111 kb on + strand, within ydjJat 5150.111 kb on + strand, within ydjJat 5150.301 kb on + strand, within ydjJat 5150.302 kb on - strand, within ydjJat 5150.658 kb on + strand, within ydjJat 5151.428 kb on + strand, within ydjIat 5151.539 kb on + strand, within ydjIat 5151.827 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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5,149,002 + ydjK OKFHMN_26750 0.30 -1.3
5,149,002 + ydjK OKFHMN_26750 0.30 +0.7
5,149,004 + ydjK OKFHMN_26750 0.30 +0.4
5,149,004 + ydjK OKFHMN_26750 0.30 -0.9
5,149,686 + ydjK OKFHMN_26750 0.80 +0.3
5,149,686 + ydjK OKFHMN_26750 0.80 -0.4
5,149,688 + ydjK OKFHMN_26750 0.80 -1.6
5,149,716 + ydjK OKFHMN_26750 0.82 -0.3
5,149,793 + ydjK OKFHMN_26750 0.87 +0.8
5,149,807 - ydjK OKFHMN_26750 0.88 +0.6
5,149,829 + ydjK OKFHMN_26750 0.90 -2.0
5,150,111 + ydjJ OKFHMN_26755 0.12 +1.5
5,150,111 + ydjJ OKFHMN_26755 0.12 +1.1
5,150,301 + ydjJ OKFHMN_26755 0.30 -2.0
5,150,302 - ydjJ OKFHMN_26755 0.30 -0.4
5,150,658 + ydjJ OKFHMN_26755 0.65 +1.3
5,151,428 + ydjI OKFHMN_26760 0.45 -0.7
5,151,539 + ydjI OKFHMN_26760 0.59 -0.5
5,151,827 - +0.2

Or see this region's nucleotide sequence