Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt manZ and manY are separated by 12 nucleotides manY and manX are separated by 62 nucleotides manX and yoaL are separated by 265 nucleotides yoaL and yoaE overlap by 13 nucleotides
OKFHMN_26520: manZ - PTS mannose transporter subunit IID, at 5,103,844 to 5,104,695
manZ
OKFHMN_26525: manY - PTS mannose transporter subunit IIC, at 5,104,708 to 5,105,508
manY
OKFHMN_26530: manX - PTS mannose transporter subunit IIAB, at 5,105,571 to 5,106,542
manX
OKFHMN_26535: yoaL - Protein YoaL, at 5,106,808 to 5,107,017
yoaL
OKFHMN_26540: yoaE - CNNM family cation transport protein YoaE, at 5,107,005 to 5,108,561
yoaE
Position (kb) 5105
5106
5107 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 5104.621 kb on - strand at 5104.675 kb on - strand at 5104.686 kb on + strand at 5104.776 kb on - strand at 5104.785 kb on + strand at 5104.797 kb on - strand, within manY at 5104.797 kb on - strand, within manY at 5104.816 kb on - strand, within manY at 5105.024 kb on - strand, within manY at 5105.161 kb on - strand, within manY at 5105.163 kb on + strand, within manY at 5105.266 kb on - strand, within manY at 5105.411 kb on - strand, within manY at 5105.573 kb on - strand at 5105.810 kb on + strand, within manX at 5105.811 kb on - strand, within manX at 5105.814 kb on + strand, within manX at 5105.824 kb on - strand, within manX at 5105.824 kb on - strand, within manX at 5105.884 kb on - strand, within manX at 5105.969 kb on + strand, within manX at 5106.061 kb on + strand, within manX at 5106.341 kb on + strand, within manX at 5106.342 kb on - strand, within manX at 5106.366 kb on - strand, within manX at 5106.398 kb on - strand, within manX at 5106.531 kb on - strand at 5106.557 kb on - strand at 5106.566 kb on - strand at 5106.588 kb on - strand at 5106.588 kb on - strand at 5106.633 kb on - strand at 5107.271 kb on + strand, within yoaE at 5107.272 kb on - strand, within yoaE at 5107.272 kb on - strand, within yoaE at 5107.368 kb on + strand, within yoaE
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 5,104,621 - -2.2 5,104,675 - +0.2 5,104,686 + -0.1 5,104,776 - +1.0 5,104,785 + -6.5 5,104,797 - manY OKFHMN_26525 0.11 -0.9 5,104,797 - manY OKFHMN_26525 0.11 -0.3 5,104,816 - manY OKFHMN_26525 0.13 -1.3 5,105,024 - manY OKFHMN_26525 0.39 +0.5 5,105,161 - manY OKFHMN_26525 0.57 -0.6 5,105,163 + manY OKFHMN_26525 0.57 -0.3 5,105,266 - manY OKFHMN_26525 0.70 +0.4 5,105,411 - manY OKFHMN_26525 0.88 +0.5 5,105,573 - -0.3 5,105,810 + manX OKFHMN_26530 0.25 +0.9 5,105,811 - manX OKFHMN_26530 0.25 +0.1 5,105,814 + manX OKFHMN_26530 0.25 +0.2 5,105,824 - manX OKFHMN_26530 0.26 -2.5 5,105,824 - manX OKFHMN_26530 0.26 +1.3 5,105,884 - manX OKFHMN_26530 0.32 +0.4 5,105,969 + manX OKFHMN_26530 0.41 +0.2 5,106,061 + manX OKFHMN_26530 0.50 +0.4 5,106,341 + manX OKFHMN_26530 0.79 -0.2 5,106,342 - manX OKFHMN_26530 0.79 +0.1 5,106,366 - manX OKFHMN_26530 0.82 -0.1 5,106,398 - manX OKFHMN_26530 0.85 +0.5 5,106,531 - +0.9 5,106,557 - +0.0 5,106,566 - +0.2 5,106,588 - -3.3 5,106,588 - -0.3 5,106,633 - -1.3 5,107,271 + yoaE OKFHMN_26540 0.17 -1.1 5,107,272 - yoaE OKFHMN_26540 0.17 -0.9 5,107,272 - yoaE OKFHMN_26540 0.17 -0.1 5,107,368 + yoaE OKFHMN_26540 0.23 +1.1
Or see this region's nucleotide sequence