Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKFHMN_25270 and OKFHMN_25275 are separated by 34 nucleotides OKFHMN_25275 and OKFHMN_25280 are separated by 21 nucleotides OKFHMN_25280 and OKFHMN_25285 overlap by 4 nucleotides OKFHMN_25285 and OKFHMN_25290 are separated by 32 nucleotides OKFHMN_25290 and OKFHMN_25295 overlap by 4 nucleotides OKFHMN_25295 and OKFHMN_25300 are separated by 126 nucleotides
OKFHMN_25270: OKFHMN_25270 - replication protein, at 4,906,804 to 4,907,226
_25270
OKFHMN_25275: OKFHMN_25275 - DUF1627 domain-containing protein, at 4,907,261 to 4,907,959
_25275
OKFHMN_25280: OKFHMN_25280 - hypothetical protein, at 4,907,981 to 4,908,205
_25280
OKFHMN_25285: OKFHMN_25285 - Eae-like protein, at 4,908,202 to 4,908,558
_25285
OKFHMN_25290: OKFHMN_25290 - hypothetical protein, at 4,908,591 to 4,908,743
_25290
OKFHMN_25295: OKFHMN_25295 - Prophage protein, at 4,908,740 to 4,909,051
_25295
OKFHMN_25300: OKFHMN_25300 - DUF551 domain-containing protein, at 4,909,178 to 4,909,741
_25300
Position (kb) 4908
4909 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 4907.602 kb on + strand, within OKFHMN_25275 at 4907.606 kb on + strand, within OKFHMN_25275 at 4907.606 kb on + strand, within OKFHMN_25275 at 4907.619 kb on + strand, within OKFHMN_25275 at 4907.928 kb on + strand at 4908.175 kb on + strand, within OKFHMN_25280 at 4908.175 kb on + strand, within OKFHMN_25280 at 4908.213 kb on + strand at 4908.260 kb on + strand, within OKFHMN_25285 at 4908.343 kb on - strand, within OKFHMN_25285 at 4908.387 kb on + strand, within OKFHMN_25285 at 4908.392 kb on - strand, within OKFHMN_25285 at 4908.512 kb on + strand, within OKFHMN_25285 at 4908.512 kb on + strand, within OKFHMN_25285 at 4908.512 kb on + strand, within OKFHMN_25285
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 4,907,602 + OKFHMN_25275 0.49 -3.9 4,907,606 + OKFHMN_25275 0.49 +1.0 4,907,606 + OKFHMN_25275 0.49 -0.2 4,907,619 + OKFHMN_25275 0.51 +0.9 4,907,928 + -3.1 4,908,175 + OKFHMN_25280 0.86 -1.0 4,908,175 + OKFHMN_25280 0.86 +0.8 4,908,213 + +0.3 4,908,260 + OKFHMN_25285 0.16 +1.1 4,908,343 - OKFHMN_25285 0.39 +0.3 4,908,387 + OKFHMN_25285 0.52 -2.2 4,908,392 - OKFHMN_25285 0.53 -1.0 4,908,512 + OKFHMN_25285 0.87 +0.2 4,908,512 + OKFHMN_25285 0.87 -2.8 4,908,512 + OKFHMN_25285 0.87 -3.4
Or see this region's nucleotide sequence