Strain Fitness in Escherichia coli ECRC100 around OKFHMN_25215

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAsn_trna and mtfA are separated by 100 nucleotidesmtfA and Ser_trna are separated by 93 nucleotidesSer_trna and xerD are separated by 52 nucleotides OKFHMN_25205: Asn_trna - tRNA-Asn(gtt), at 4,897,934 to 4,898,009 _trna OKFHMN_25210: mtfA - DgsA anti-repressor MtfA, at 4,898,110 to 4,898,907 mtfA OKFHMN_25215: Ser_trna - tRNA-Ser(cga), at 4,899,001 to 4,899,090 _trna OKFHMN_25220: xerD - integrase, at 4,899,143 to 4,900,165 xerD Position (kb) 4899 4900Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4898.297 kb on + strand, within mtfAat 4898.297 kb on + strand, within mtfAat 4898.695 kb on + strand, within mtfAat 4898.884 kb on + strandat 4898.901 kb on + strandat 4898.901 kb on + strandat 4898.901 kb on + strandat 4898.902 kb on - strandat 4898.961 kb on - strandat 4899.225 kb on - strandat 4899.286 kb on - strand, within xerDat 4899.397 kb on - strand, within xerDat 4899.400 kb on + strand, within xerDat 4899.401 kb on - strand, within xerDat 4899.401 kb on - strand, within xerDat 4899.401 kb on - strand, within xerDat 4899.645 kb on - strand, within xerDat 4899.671 kb on + strand, within xerDat 4899.736 kb on - strand, within xerDat 4899.829 kb on - strand, within xerDat 4899.946 kb on - strand, within xerDat 4900.021 kb on - strand, within xerDat 4900.032 kb on - strand, within xerD

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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4,898,297 + mtfA OKFHMN_25210 0.23 -1.7
4,898,297 + mtfA OKFHMN_25210 0.23 -0.2
4,898,695 + mtfA OKFHMN_25210 0.73 -2.0
4,898,884 + +0.2
4,898,901 + -0.7
4,898,901 + -0.9
4,898,901 + +0.1
4,898,902 - +0.4
4,898,961 - +1.9
4,899,225 - -3.3
4,899,286 - xerD OKFHMN_25220 0.14 +0.3
4,899,397 - xerD OKFHMN_25220 0.25 -3.2
4,899,400 + xerD OKFHMN_25220 0.25 +1.4
4,899,401 - xerD OKFHMN_25220 0.25 -0.3
4,899,401 - xerD OKFHMN_25220 0.25 -1.4
4,899,401 - xerD OKFHMN_25220 0.25 -1.6
4,899,645 - xerD OKFHMN_25220 0.49 -2.2
4,899,671 + xerD OKFHMN_25220 0.52 +0.7
4,899,736 - xerD OKFHMN_25220 0.58 +1.8
4,899,829 - xerD OKFHMN_25220 0.67 +0.7
4,899,946 - xerD OKFHMN_25220 0.78 -1.1
4,900,021 - xerD OKFHMN_25220 0.86 +0.9
4,900,032 - xerD OKFHMN_25220 0.87 -0.0

Or see this region's nucleotide sequence