Strain Fitness in Escherichia coli ECRC100 around OKFHMN_24935

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKFHMN_24920 and OKFHMN_24925 are separated by 14 nucleotidesOKFHMN_24925 and OKFHMN_24930 are separated by 23 nucleotidesOKFHMN_24930 and OKFHMN_24935 are separated by 47 nucleotidesOKFHMN_24935 and OKFHMN_24940 overlap by 8 nucleotidesOKFHMN_24940 and gp18 overlap by 1 nucleotides OKFHMN_24920: OKFHMN_24920 - phage tail protein, at 4,838,655 to 4,839,371 _24920 OKFHMN_24925: OKFHMN_24925 - phage tail protein, at 4,839,386 to 4,839,760 _24925 OKFHMN_24930: OKFHMN_24930 - Phage tail protein, at 4,839,784 to 4,840,065 _24930 OKFHMN_24935: OKFHMN_24935 - phage tail tape measure protein, at 4,840,113 to 4,843,355 _24935 OKFHMN_24940: OKFHMN_24940 - phage tail protein, at 4,843,348 to 4,843,689 _24940 OKFHMN_24945: gp18 - phage minor tail protein L, at 4,843,689 to 4,844,387 gp18 Position (kb) 4840 4841 4842 4843 4844Strain fitness (log2 ratio) -1 0 1at 4842.633 kb on + strand, within OKFHMN_24935

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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4,842,633 + OKFHMN_24935 0.78 +0.1

Or see this region's nucleotide sequence