Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKFHMN_24755 and OKFHMN_24765 are separated by 255 nucleotides OKFHMN_24765 and OKFHMN_24770 are separated by 74 nucleotides OKFHMN_24770 and ninG overlap by 1 nucleotides
OKFHMN_24755: OKFHMN_24755 - ORF6N domain-containing protein, at 4,816,974 to 4,817,732
_24755
OKFHMN_24765: OKFHMN_24765 - phage antirepressor Ant, at 4,817,988 to 4,818,668
_24765
OKFHMN_24770: OKFHMN_24770 - DNA-binding protein, at 4,818,743 to 4,819,465
_24770
OKFHMN_24775: ninG - Protein ninG, at 4,819,465 to 4,820,070
ninG
Position (kb) 4817
4818
4819 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 4817.034 kb on - strand at 4817.210 kb on - strand, within OKFHMN_24755 at 4817.239 kb on + strand, within OKFHMN_24755 at 4817.269 kb on + strand, within OKFHMN_24755 at 4817.447 kb on - strand, within OKFHMN_24755 at 4817.450 kb on + strand, within OKFHMN_24755 at 4817.451 kb on - strand, within OKFHMN_24755 at 4817.458 kb on - strand, within OKFHMN_24755 at 4817.490 kb on + strand, within OKFHMN_24755 at 4817.505 kb on + strand, within OKFHMN_24755 at 4817.505 kb on + strand, within OKFHMN_24755 at 4817.505 kb on + strand, within OKFHMN_24755 at 4817.505 kb on + strand, within OKFHMN_24755 at 4817.506 kb on - strand, within OKFHMN_24755 at 4817.506 kb on - strand, within OKFHMN_24755 at 4817.506 kb on - strand, within OKFHMN_24755 at 4817.526 kb on - strand, within OKFHMN_24755 at 4817.567 kb on + strand, within OKFHMN_24755 at 4817.568 kb on - strand, within OKFHMN_24755 at 4817.568 kb on - strand, within OKFHMN_24755 at 4817.588 kb on - strand, within OKFHMN_24755 at 4817.602 kb on - strand, within OKFHMN_24755 at 4817.666 kb on + strand at 4817.771 kb on + strand at 4817.771 kb on + strand at 4817.771 kb on + strand at 4817.863 kb on + strand at 4817.884 kb on + strand at 4817.884 kb on + strand at 4817.884 kb on + strand at 4817.982 kb on + strand at 4818.019 kb on + strand at 4818.032 kb on + strand at 4818.035 kb on + strand at 4818.035 kb on + strand at 4818.037 kb on + strand at 4818.037 kb on + strand at 4818.037 kb on + strand at 4818.070 kb on + strand, within OKFHMN_24765 at 4818.072 kb on + strand, within OKFHMN_24765 at 4818.350 kb on + strand, within OKFHMN_24765 at 4818.489 kb on + strand, within OKFHMN_24765 at 4818.528 kb on + strand, within OKFHMN_24765 at 4818.581 kb on + strand, within OKFHMN_24765 at 4818.582 kb on - strand, within OKFHMN_24765 at 4818.630 kb on - strand at 4818.681 kb on + strand at 4818.681 kb on + strand at 4818.832 kb on - strand, within OKFHMN_24770 at 4818.970 kb on + strand, within OKFHMN_24770 at 4819.217 kb on - strand, within OKFHMN_24770 at 4819.305 kb on - strand, within OKFHMN_24770 at 4819.441 kb on + strand at 4819.560 kb on + strand, within ninG at 4819.560 kb on + strand, within ninG
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 4,817,034 - -0.8 4,817,210 - OKFHMN_24755 0.31 -1.2 4,817,239 + OKFHMN_24755 0.35 +1.0 4,817,269 + OKFHMN_24755 0.39 -0.6 4,817,447 - OKFHMN_24755 0.62 +0.5 4,817,450 + OKFHMN_24755 0.63 +0.4 4,817,451 - OKFHMN_24755 0.63 +0.8 4,817,458 - OKFHMN_24755 0.64 +0.5 4,817,490 + OKFHMN_24755 0.68 -1.3 4,817,505 + OKFHMN_24755 0.70 -2.3 4,817,505 + OKFHMN_24755 0.70 +1.2 4,817,505 + OKFHMN_24755 0.70 +0.5 4,817,505 + OKFHMN_24755 0.70 +0.2 4,817,506 - OKFHMN_24755 0.70 -0.3 4,817,506 - OKFHMN_24755 0.70 +0.9 4,817,506 - OKFHMN_24755 0.70 +0.2 4,817,526 - OKFHMN_24755 0.73 -0.0 4,817,567 + OKFHMN_24755 0.78 -0.4 4,817,568 - OKFHMN_24755 0.78 -0.4 4,817,568 - OKFHMN_24755 0.78 +2.1 4,817,588 - OKFHMN_24755 0.81 -2.1 4,817,602 - OKFHMN_24755 0.83 -2.4 4,817,666 + -0.2 4,817,771 + -1.3 4,817,771 + -0.7 4,817,771 + +0.5 4,817,863 + +0.5 4,817,884 + -2.8 4,817,884 + -1.1 4,817,884 + -2.1 4,817,982 + -0.3 4,818,019 + +0.7 4,818,032 + -1.3 4,818,035 + -0.3 4,818,035 + +0.8 4,818,037 + +1.5 4,818,037 + -0.4 4,818,037 + +0.5 4,818,070 + OKFHMN_24765 0.12 -3.8 4,818,072 + OKFHMN_24765 0.12 +0.6 4,818,350 + OKFHMN_24765 0.53 -1.6 4,818,489 + OKFHMN_24765 0.74 -0.1 4,818,528 + OKFHMN_24765 0.79 +0.8 4,818,581 + OKFHMN_24765 0.87 +0.4 4,818,582 - OKFHMN_24765 0.87 -2.6 4,818,630 - -0.2 4,818,681 + -0.6 4,818,681 + -2.5 4,818,832 - OKFHMN_24770 0.12 +1.0 4,818,970 + OKFHMN_24770 0.31 +0.5 4,819,217 - OKFHMN_24770 0.66 +0.8 4,819,305 - OKFHMN_24770 0.78 +1.5 4,819,441 + +0.6 4,819,560 + ninG OKFHMN_24775 0.16 -3.2 4,819,560 + ninG OKFHMN_24775 0.16 +0.9
Or see this region's nucleotide sequence