Strain Fitness in Escherichia coli ECRC100 around OKFHMN_24430

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntwzx and rfbE are separated by 2 nucleotidesrfbE and rfaB are separated by 24 nucleotides OKFHMN_24425: wzx - O157 family O-antigen flippase, at 4,771,185 to 4,772,576 wzx OKFHMN_24430: rfbE - GDP-perosamine synthase RfbE/PerA, at 4,772,579 to 4,773,673 rfbE OKFHMN_24435: rfaB - glycosyl transferase, at 4,773,698 to 4,774,912 rfaB Position (kb) 4772 4773 4774Strain fitness (log2 ratio) -1 0 1at 4772.827 kb on + strand, within rfbEat 4772.829 kb on + strand, within rfbEat 4773.247 kb on - strand, within rfbEat 4773.285 kb on + strand, within rfbEat 4774.573 kb on + strand, within rfaB

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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4,772,827 + rfbE OKFHMN_24430 0.23 +1.3
4,772,829 + rfbE OKFHMN_24430 0.23 +0.7
4,773,247 - rfbE OKFHMN_24430 0.61 +1.3
4,773,285 + rfbE OKFHMN_24430 0.64 +0.7
4,774,573 + rfaB OKFHMN_24435 0.72 +1.7

Or see this region's nucleotide sequence