Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt napA and napG are separated by 6 nucleotides napG and napH overlap by 14 nucleotides napH and napH overlap by 4 nucleotides
OKFHMN_23255: napA - nitrate reductase catalytic subunit NapA, at 4,537,051 to 4,539,537
napA
OKFHMN_23260: napG - ferredoxin-type protein NapG, at 4,539,544 to 4,540,239
napG
OKFHMN_23265: napH - quinol dehydrogenase ferredoxin subunit NapH, at 4,540,226 to 4,541,089
napH
OKFHMN_23270: napH - quinol dehydrogenase ferredoxin subunit NapH, at 4,541,086 to 4,541,535
napH
Position (kb) 4539
4540
4541 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 4538.654 kb on - strand, within napA at 4538.673 kb on + strand, within napA at 4538.674 kb on - strand, within napA at 4538.696 kb on + strand, within napA at 4538.920 kb on + strand, within napA at 4538.947 kb on + strand, within napA at 4538.947 kb on + strand, within napA at 4538.948 kb on - strand, within napA at 4539.040 kb on - strand, within napA at 4539.069 kb on + strand, within napA at 4539.101 kb on - strand, within napA at 4539.102 kb on + strand, within napA at 4539.102 kb on + strand, within napA at 4539.109 kb on + strand, within napA at 4539.127 kb on - strand, within napA at 4539.184 kb on + strand, within napA at 4539.184 kb on + strand, within napA at 4539.185 kb on - strand, within napA at 4539.422 kb on - strand at 4539.422 kb on - strand at 4539.422 kb on - strand at 4539.535 kb on + strand at 4539.536 kb on - strand at 4539.543 kb on + strand at 4539.543 kb on + strand at 4539.760 kb on + strand, within napG at 4539.761 kb on - strand, within napG at 4539.814 kb on + strand, within napG at 4539.938 kb on + strand, within napG at 4540.160 kb on + strand, within napG at 4540.386 kb on - strand, within napH at 4540.387 kb on + strand, within napH at 4540.737 kb on + strand, within napH at 4540.738 kb on - strand, within napH at 4540.844 kb on + strand, within napH at 4540.912 kb on + strand, within napH at 4540.912 kb on + strand, within napH at 4540.912 kb on + strand, within napH at 4540.950 kb on + strand, within napH at 4540.951 kb on - strand, within napH at 4541.046 kb on + strand at 4541.047 kb on - strand at 4541.056 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 4,538,654 - napA OKFHMN_23255 0.64 -1.0 4,538,673 + napA OKFHMN_23255 0.65 +0.5 4,538,674 - napA OKFHMN_23255 0.65 +0.2 4,538,696 + napA OKFHMN_23255 0.66 +0.4 4,538,920 + napA OKFHMN_23255 0.75 -1.5 4,538,947 + napA OKFHMN_23255 0.76 +0.2 4,538,947 + napA OKFHMN_23255 0.76 -0.1 4,538,948 - napA OKFHMN_23255 0.76 +0.2 4,539,040 - napA OKFHMN_23255 0.80 -1.3 4,539,069 + napA OKFHMN_23255 0.81 +0.1 4,539,101 - napA OKFHMN_23255 0.82 -1.8 4,539,102 + napA OKFHMN_23255 0.82 -2.1 4,539,102 + napA OKFHMN_23255 0.82 +0.3 4,539,109 + napA OKFHMN_23255 0.83 -0.2 4,539,127 - napA OKFHMN_23255 0.83 +0.6 4,539,184 + napA OKFHMN_23255 0.86 -3.8 4,539,184 + napA OKFHMN_23255 0.86 -0.1 4,539,185 - napA OKFHMN_23255 0.86 +0.8 4,539,422 - +0.2 4,539,422 - +1.0 4,539,422 - +0.4 4,539,535 + +0.6 4,539,536 - +0.6 4,539,543 + -1.1 4,539,543 + +0.3 4,539,760 + napG OKFHMN_23260 0.31 -0.5 4,539,761 - napG OKFHMN_23260 0.31 +0.7 4,539,814 + napG OKFHMN_23260 0.39 +0.4 4,539,938 + napG OKFHMN_23260 0.57 +0.1 4,540,160 + napG OKFHMN_23260 0.89 -0.2 4,540,386 - napH OKFHMN_23265 0.19 -0.6 4,540,387 + napH OKFHMN_23265 0.19 -0.4 4,540,737 + napH OKFHMN_23265 0.59 -0.3 4,540,738 - napH OKFHMN_23265 0.59 +1.6 4,540,844 + napH OKFHMN_23265 0.72 +0.3 4,540,912 + napH OKFHMN_23265 0.79 -0.9 4,540,912 + napH OKFHMN_23265 0.79 -1.0 4,540,912 + napH OKFHMN_23265 0.79 -1.1 4,540,950 + napH OKFHMN_23265 0.84 +0.1 4,540,951 - napH OKFHMN_23265 0.84 -0.3 4,541,046 + +0.4 4,541,047 - +0.8 4,541,056 - -1.0
Or see this region's nucleotide sequence