Strain Fitness in Escherichia coli ECRC100 around OKFHMN_23125

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyfaL and ubiG are separated by 140 nucleotidesubiG and gyrA are separated by 146 nucleotides OKFHMN_23120: yfaL - AIDA-I family autotransporter adhesin YfaL/EhaC, at 4,503,405 to 4,507,157 yfaL OKFHMN_23125: ubiG - bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG, at 4,507,298 to 4,508,020 ubiG OKFHMN_23130: gyrA - DNA topoisomerase (ATP-hydrolyzing) subunit A, at 4,508,167 to 4,510,794 gyrA Position (kb) 4507 4508 4509Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4506.650 kb on + strand, within yfaLat 4506.663 kb on + strand, within yfaLat 4506.808 kb on - strandat 4506.808 kb on - strandat 4506.931 kb on + strandat 4506.932 kb on - strandat 4506.941 kb on - strandat 4506.954 kb on + strandat 4507.176 kb on + strandat 4507.211 kb on + strandat 4507.211 kb on + strandat 4507.227 kb on - strandat 4508.038 kb on - strandat 4508.059 kb on + strandat 4508.059 kb on + strandat 4508.060 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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4,506,650 + yfaL OKFHMN_23120 0.86 +0.0
4,506,663 + yfaL OKFHMN_23120 0.87 +0.4
4,506,808 - -0.5
4,506,808 - -0.3
4,506,931 + +0.5
4,506,932 - +3.0
4,506,941 - +1.5
4,506,954 + -1.7
4,507,176 + -0.5
4,507,211 + +0.0
4,507,211 + -3.4
4,507,227 - +0.2
4,508,038 - -0.6
4,508,059 + -0.1
4,508,059 + +1.5
4,508,060 - +0.1

Or see this region's nucleotide sequence