Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt 16S_rrna and Glu_trna are separated by 85 nucleotides Glu_trna and 23S_rrna are separated by 193 nucleotides 23S_rrna and 5S_rrna are separated by 94 nucleotides 5S_rrna and yfiS are separated by 80 nucleotides yfiS and kgtP are separated by 179 nucleotides
OKFHMN_21270: 16S_rrna - 16S ribosomal RNA, at 4,123,303 to 4,124,844
_rrna
OKFHMN_21275: Glu_trna - tRNA-Glu(ttc), at 4,124,930 to 4,125,005
_trna
OKFHMN_21285: 23S_rrna - 23S ribosomal RNA, at 4,125,199 to 4,128,103
_rrna
OKFHMN_21290: 5S_rrna - 5S ribosomal RNA, at 4,128,198 to 4,128,313
_rrna
OKFHMN_21295: yfiS - Protein YfiS, at 4,128,394 to 4,128,456
yfiS
OKFHMN_21300: kgtP - alpha-ketoglutarate permease, at 4,128,636 to 4,129,934
kgtP
Position (kb)
4125
4126
4127
4128
4129 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4128.396 kb on - strand at 4128.398 kb on - strand at 4128.499 kb on - strand at 4128.629 kb on + strand at 4128.726 kb on - strand at 4128.893 kb on - strand, within kgtP at 4128.939 kb on - strand, within kgtP at 4128.939 kb on - strand, within kgtP at 4129.079 kb on + strand, within kgtP at 4129.080 kb on - strand, within kgtP at 4129.080 kb on - strand, within kgtP
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 4,128,396 - -0.7 4,128,398 - -0.4 4,128,499 - -0.8 4,128,629 + -1.2 4,128,726 - +1.2 4,128,893 - kgtP OKFHMN_21300 0.20 +0.4 4,128,939 - kgtP OKFHMN_21300 0.23 +1.0 4,128,939 - kgtP OKFHMN_21300 0.23 -3.4 4,129,079 + kgtP OKFHMN_21300 0.34 +0.6 4,129,080 - kgtP OKFHMN_21300 0.34 -0.1 4,129,080 - kgtP OKFHMN_21300 0.34 +1.8
Or see this region's nucleotide sequence