Strain Fitness in Escherichia coli ECRC100 around OKFHMN_21055

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKFHMN_21045 and OKFHMN_21050 are separated by 149 nucleotidesOKFHMN_21050 and OKFHMN_21055 are separated by 4 nucleotidesOKFHMN_21055 and rrrD are separated by 50 nucleotidesrrrD and tnpB are separated by 75 nucleotidestnpB and tnpB overlap by 4 nucleotides OKFHMN_21045: OKFHMN_21045 - DUF1737 domain-containing protein, at 4,088,474 to 4,090,327 _21045 OKFHMN_21050: OKFHMN_21050 - holin, at 4,090,477 to 4,090,692 _21050 OKFHMN_21055: OKFHMN_21055 - DUF1327 domain-containing protein, at 4,090,697 to 4,091,041 _21055 OKFHMN_21060: rrrD - lysozyme, at 4,091,092 to 4,091,322 rrrD OKFHMN_21065: tnpB - IS66 family insertion sequence element accessory protein TnpB, at 4,091,398 to 4,091,778 tnpB OKFHMN_21070: tnpB - IS66 family insertion sequence element accessory protein TnpB, at 4,091,775 to 4,092,122 tnpB Position (kb) 4090 4091 4092Strain fitness (log2 ratio) -1 0 1at 4091.271 kb on + strand, within rrrDat 4091.271 kb on + strand, within rrrD

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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4,091,271 + rrrD OKFHMN_21060 0.77 +0.2
4,091,271 + rrrD OKFHMN_21060 0.77 -0.6

Or see this region's nucleotide sequence