Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt stpA and ygaP are separated by 52 nucleotides ygaP and ygaV are separated by 9 nucleotides ygaV and yqaE are separated by 182 nucleotides yqaE and kbp are separated by 83 nucleotides kbp and csiR are separated by 0 nucleotides
OKFHMN_20875: stpA - DNA-binding protein StpA, at 4,055,916 to 4,056,320
stpA
OKFHMN_20880: ygaP - thiosulfate sulfurtransferase YgaP, at 4,056,373 to 4,056,891
ygaP
OKFHMN_20885: ygaV - putative HTH-type transcriptional regulator YgaV, at 4,056,901 to 4,057,200
ygaV
OKFHMN_20890: yqaE - UPF0057 membrane protein YqaE, at 4,057,383 to 4,057,541
yqaE
OKFHMN_20895: kbp - potassium binding protein Kbp, at 4,057,625 to 4,058,074
kbp
OKFHMN_20900: csiR - DNA-binding transcriptional regulator CsiR, at 4,058,075 to 4,058,737
csiR
Position (kb) 4056
4057
4058 Strain fitness (log2 ratio) -1
0
1
2 at 4056.026 kb on + strand, within stpA at 4056.318 kb on + strand at 4056.488 kb on - strand, within ygaP at 4056.823 kb on - strand, within ygaP at 4056.850 kb on + strand at 4056.911 kb on + strand at 4056.968 kb on - strand, within ygaV at 4056.968 kb on - strand, within ygaV at 4057.181 kb on - strand at 4057.205 kb on - strand at 4057.253 kb on + strand at 4057.349 kb on + strand at 4057.379 kb on - strand at 4057.382 kb on + strand at 4057.472 kb on + strand, within yqaE at 4057.494 kb on + strand, within yqaE at 4057.495 kb on - strand, within yqaE at 4057.495 kb on - strand, within yqaE at 4057.496 kb on + strand, within yqaE at 4057.586 kb on + strand at 4057.620 kb on + strand at 4057.620 kb on + strand at 4057.621 kb on - strand at 4057.625 kb on - strand at 4057.679 kb on - strand, within kbp at 4057.693 kb on + strand, within kbp at 4057.743 kb on + strand, within kbp at 4057.853 kb on - strand, within kbp at 4058.072 kb on + strand at 4058.073 kb on - strand at 4058.076 kb on + strand at 4058.077 kb on - strand at 4058.121 kb on - strand at 4058.156 kb on - strand, within csiR
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 4,056,026 + stpA OKFHMN_20875 0.27 +0.0 4,056,318 + +0.1 4,056,488 - ygaP OKFHMN_20880 0.22 +0.3 4,056,823 - ygaP OKFHMN_20880 0.87 +0.5 4,056,850 + +0.5 4,056,911 + +0.1 4,056,968 - ygaV OKFHMN_20885 0.22 -0.4 4,056,968 - ygaV OKFHMN_20885 0.22 +2.1 4,057,181 - +1.7 4,057,205 - +0.0 4,057,253 + -1.1 4,057,349 + +0.5 4,057,379 - -0.0 4,057,382 + -0.2 4,057,472 + yqaE OKFHMN_20890 0.56 -0.6 4,057,494 + yqaE OKFHMN_20890 0.70 +0.6 4,057,495 - yqaE OKFHMN_20890 0.70 -0.3 4,057,495 - yqaE OKFHMN_20890 0.70 +0.6 4,057,496 + yqaE OKFHMN_20890 0.71 -1.0 4,057,586 + -0.1 4,057,620 + +1.2 4,057,620 + +0.1 4,057,621 - +0.2 4,057,625 - +0.8 4,057,679 - kbp OKFHMN_20895 0.12 -0.6 4,057,693 + kbp OKFHMN_20895 0.15 -0.6 4,057,743 + kbp OKFHMN_20895 0.26 +0.7 4,057,853 - kbp OKFHMN_20895 0.51 +0.0 4,058,072 + +0.4 4,058,073 - -0.4 4,058,076 + +1.7 4,058,077 - -1.0 4,058,121 - +0.3 4,058,156 - csiR OKFHMN_20900 0.12 +0.4
Or see this region's nucleotide sequence