Strain Fitness in Escherichia coli ECRC100 around OKFHMN_20525

Experiment: L-Arabinose

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Arabinose
3,992,087	-	ecdD	OKFHMN_20515	0.31	+0.8
3,992,088	+	ecdD	OKFHMN_20515	0.32	+0.8
3,992,109	+	ecdD	OKFHMN_20515	0.41	+0.5
3,992,109	+	ecdD	OKFHMN_20515	0.41	+0.4
3,992,109	+	ecdD	OKFHMN_20515	0.41	-2.5
3,992,109	+	ecdD	OKFHMN_20515	0.41	-2.7
3,992,112	-	ecdD	OKFHMN_20515	0.42	+1.0
3,992,809	-	pphB	OKFHMN_20520	0.79	+0.5
3,992,846	-	pphB	OKFHMN_20520	0.85	-2.0
3,993,008	+				-0.1
3,993,259	-				+0.3
3,993,456	+	mutS	OKFHMN_20525	0.16	-2.2
3,993,457	-	mutS	OKFHMN_20525	0.16	-1.0
3,993,509	+	mutS	OKFHMN_20525	0.18	-2.5
3,993,577	-	mutS	OKFHMN_20525	0.20	-0.4
3,993,695	-	mutS	OKFHMN_20525	0.25	-0.0
3,993,698	+	mutS	OKFHMN_20525	0.25	+0.1
3,993,698	+	mutS	OKFHMN_20525	0.25	-0.7
3,993,699	-	mutS	OKFHMN_20525	0.25	-2.1
3,993,710	+	mutS	OKFHMN_20525	0.26	-0.3
3,993,711	-	mutS	OKFHMN_20525	0.26	+0.4
3,993,711	-	mutS	OKFHMN_20525	0.26	+0.5
3,993,711	-	mutS	OKFHMN_20525	0.26	+0.6
3,993,746	+	mutS	OKFHMN_20525	0.27	-0.3
3,993,747	-	mutS	OKFHMN_20525	0.27	+0.1
3,993,747	-	mutS	OKFHMN_20525	0.27	-2.5
3,993,751	-	mutS	OKFHMN_20525	0.27	-0.1
3,993,751	-	mutS	OKFHMN_20525	0.27	+0.1
3,993,751	-	mutS	OKFHMN_20525	0.27	-0.3
3,993,778	-	mutS	OKFHMN_20525	0.28	+1.1
3,993,780	+	mutS	OKFHMN_20525	0.28	+0.2
3,993,780	+	mutS	OKFHMN_20525	0.28	+0.6
3,993,780	+	mutS	OKFHMN_20525	0.28	+0.2
3,993,781	-	mutS	OKFHMN_20525	0.28	-0.3
3,993,914	+	mutS	OKFHMN_20525	0.34	+0.3
3,993,914	+	mutS	OKFHMN_20525	0.34	-0.5
3,994,080	+	mutS	OKFHMN_20525	0.40	+0.1
3,994,097	-	mutS	OKFHMN_20525	0.41	+0.1
3,994,112	+	mutS	OKFHMN_20525	0.41	+0.5
3,994,146	+	mutS	OKFHMN_20525	0.43	-0.2
3,994,148	+	mutS	OKFHMN_20525	0.43	+0.5
3,994,148	+	mutS	OKFHMN_20525	0.43	-1.6
3,994,148	+	mutS	OKFHMN_20525	0.43	+0.2
3,994,148	+	mutS	OKFHMN_20525	0.43	+0.7
3,994,148	+	mutS	OKFHMN_20525	0.43	+0.7
3,994,148	+	mutS	OKFHMN_20525	0.43	-1.5
3,994,155	+	mutS	OKFHMN_20525	0.43	-1.7
3,994,156	-	mutS	OKFHMN_20525	0.43	+0.6
3,994,225	+	mutS	OKFHMN_20525	0.46	+0.9
3,994,226	-	mutS	OKFHMN_20525	0.46	-0.6
3,994,243	-	mutS	OKFHMN_20525	0.46	-0.0
3,994,444	+	mutS	OKFHMN_20525	0.54	+1.1
3,994,469	-	mutS	OKFHMN_20525	0.55	+0.3
3,994,589	-	mutS	OKFHMN_20525	0.60	-5.4
3,994,589	-	mutS	OKFHMN_20525	0.60	-0.9
3,994,591	+	mutS	OKFHMN_20525	0.60	+0.7
3,994,632	+	mutS	OKFHMN_20525	0.62	-2.4
3,994,677	+	mutS	OKFHMN_20525	0.63	-0.1
3,994,698	+	mutS	OKFHMN_20525	0.64	+0.5
3,994,699	-	mutS	OKFHMN_20525	0.64	-1.0
3,994,746	+	mutS	OKFHMN_20525	0.66	+0.4
3,994,789	-	mutS	OKFHMN_20525	0.68	-0.8
3,994,867	-	mutS	OKFHMN_20525	0.71	-0.8
3,994,867	-	mutS	OKFHMN_20525	0.71	+0.2
3,994,867	-	mutS	OKFHMN_20525	0.71	-1.1
3,995,047	+	mutS	OKFHMN_20525	0.78	-0.2
3,995,047	+	mutS	OKFHMN_20525	0.78	+0.1
3,995,075	+	mutS	OKFHMN_20525	0.79	+2.5
3,995,076	-	mutS	OKFHMN_20525	0.79	+0.3
3,995,209	-	mutS	OKFHMN_20525	0.84	-0.5
3,995,565	-				-0.4
3,995,639	+				+0.5
3,995,672	-				+0.0
3,995,672	-				+0.9
3,995,703	-		OKFHMN_20530	0.10	+0.5
3,995,787	+		OKFHMN_20530	0.73	+0.1
3,995,788	-		OKFHMN_20530	0.73	-0.6
3,995,835	+				+0.9
3,995,844	-				-0.2
3,995,854	-				-1.5
3,995,899	+				+0.3
3,995,899	+				-1.7
3,995,899	+				-0.3
3,995,914	+				+0.7
3,995,915	-				+0.8
3,995,999	+	ygbA	OKFHMN_20535	0.28	+0.5
3,996,038	-	ygbA	OKFHMN_20535	0.39	-1.3
3,996,071	-	ygbA	OKFHMN_20535	0.48	+1.2
3,996,127	+	ygbA	OKFHMN_20535	0.64	+0.5
3,996,251	+				+0.5
3,996,252	-				-1.7
3,996,291	+				+0.5
3,996,432	+				+1.8
3,996,500	-	flhA	OKFHMN_20540	0.10	-1.1
3,996,536	+	flhA	OKFHMN_20540	0.12	+1.1
3,996,595	+	flhA	OKFHMN_20540	0.15	+1.5