Strain Fitness in Escherichia coli ECRC100 around OKFHMN_20270

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntmazG and pyrG are separated by 227 nucleotidespyrG and eno are separated by 87 nucleotides OKFHMN_20265: mazG - nucleoside triphosphate pyrophosphohydrolase, at 3,943,306 to 3,944,097 mazG OKFHMN_20270: pyrG - CTP synthase (glutamine hydrolyzing), at 3,944,325 to 3,945,962 pyrG OKFHMN_20275: eno - phosphopyruvate hydratase, at 3,946,050 to 3,947,348 eno Position (kb) 3944 3945 3946Strain fitness (log2 ratio) -3 -2 -1 0 1at 3943.332 kb on + strandat 3943.335 kb on + strandat 3943.409 kb on - strand, within mazGat 3943.426 kb on + strand, within mazGat 3943.510 kb on + strand, within mazGat 3943.549 kb on - strand, within mazGat 3943.555 kb on - strand, within mazGat 3943.580 kb on + strand, within mazGat 3943.581 kb on - strand, within mazGat 3943.629 kb on + strand, within mazGat 3943.814 kb on - strand, within mazGat 3943.837 kb on + strand, within mazGat 3943.837 kb on + strand, within mazGat 3943.838 kb on - strand, within mazGat 3943.838 kb on - strand, within mazGat 3944.001 kb on + strand, within mazGat 3944.002 kb on - strand, within mazGat 3944.002 kb on - strand, within mazGat 3944.072 kb on + strandat 3945.960 kb on + strandat 3945.960 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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3,943,332 + -2.9
3,943,335 + -0.5
3,943,409 - mazG OKFHMN_20265 0.13 +0.5
3,943,426 + mazG OKFHMN_20265 0.15 -0.3
3,943,510 + mazG OKFHMN_20265 0.26 +0.2
3,943,549 - mazG OKFHMN_20265 0.31 +0.7
3,943,555 - mazG OKFHMN_20265 0.31 +0.2
3,943,580 + mazG OKFHMN_20265 0.35 -1.9
3,943,581 - mazG OKFHMN_20265 0.35 -0.1
3,943,629 + mazG OKFHMN_20265 0.41 +1.1
3,943,814 - mazG OKFHMN_20265 0.64 -0.8
3,943,837 + mazG OKFHMN_20265 0.67 -0.7
3,943,837 + mazG OKFHMN_20265 0.67 +0.1
3,943,838 - mazG OKFHMN_20265 0.67 -0.2
3,943,838 - mazG OKFHMN_20265 0.67 -0.6
3,944,001 + mazG OKFHMN_20265 0.88 +0.4
3,944,002 - mazG OKFHMN_20265 0.88 +1.6
3,944,002 - mazG OKFHMN_20265 0.88 -0.1
3,944,072 + -0.3
3,945,960 + -0.1
3,945,960 + -0.3

Or see this region's nucleotide sequence