Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt csgD and OKFHMN_19815 are separated by 703 nucleotides OKFHMN_19815 and OKFHMN_19820 are separated by 13 nucleotides OKFHMN_19820 and sctI are separated by 19 nucleotides sctI and escJ overlap by 4 nucleotides
OKFHMN_19810: csgD - LuxR family transcriptional regulator, at 3,853,913 to 3,854,413
csgD
OKFHMN_19815: OKFHMN_19815 - Type III secretion protein EprH, at 3,855,117 to 3,855,851
_19815
OKFHMN_19820: OKFHMN_19820 - type III secretion system needle complex protein, at 3,855,865 to 3,856,104
_19820
OKFHMN_19825: sctI - type III secretion system inner rod subunit SctI, at 3,856,124 to 3,856,456
sctI
OKFHMN_19830: escJ - EscJ/YscJ/HrcJ family type III secretion inner membrane ring protein, at 3,856,453 to 3,857,187
escJ
Position (kb) 3855
3856 Strain fitness (log2 ratio) -1
0
1 at 3854.452 kb on + strand at 3855.544 kb on + strand, within OKFHMN_19815 at 3855.571 kb on + strand, within OKFHMN_19815 at 3856.023 kb on + strand, within OKFHMN_19820 at 3856.066 kb on - strand, within OKFHMN_19820 at 3856.138 kb on + strand at 3856.460 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 3,854,452 + -0.0 3,855,544 + OKFHMN_19815 0.58 -0.7 3,855,571 + OKFHMN_19815 0.62 +0.5 3,856,023 + OKFHMN_19820 0.66 -1.1 3,856,066 - OKFHMN_19820 0.84 -1.2 3,856,138 + -0.0 3,856,460 - +0.7
Or see this region's nucleotide sequence