Strain Fitness in Escherichia coli ECRC100 around OKFHMN_19735

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKFHMN_19730 and OKFHMN_19735 are separated by 66 nucleotidesOKFHMN_19735 and araC are separated by 345 nucleotides OKFHMN_19730: OKFHMN_19730 - glycoside hydrolase family 15 protein, at 3,839,858 to 3,840,916 _19730 OKFHMN_19735: OKFHMN_19735 - GhoT/OrtT family toxin, at 3,840,983 to 3,841,162 _19735 OKFHMN_19740: araC - AraC family transcriptional regulator, at 3,841,508 to 3,842,257 araC Position (kb) 3840 3841 3842Strain fitness (log2 ratio) -2 -1 0 1at 3840.059 kb on + strand, within OKFHMN_19730at 3840.067 kb on + strand, within OKFHMN_19730at 3840.068 kb on - strand, within OKFHMN_19730at 3840.178 kb on - strand, within OKFHMN_19730at 3840.226 kb on + strand, within OKFHMN_19730at 3840.339 kb on - strand, within OKFHMN_19730at 3840.648 kb on - strand, within OKFHMN_19730at 3840.717 kb on + strand, within OKFHMN_19730at 3840.785 kb on - strand, within OKFHMN_19730at 3841.134 kb on + strand, within OKFHMN_19735at 3841.312 kb on - strandat 3841.379 kb on + strandat 3841.677 kb on + strand, within araCat 3841.708 kb on - strand, within araCat 3841.762 kb on - strand, within araCat 3841.958 kb on - strand, within araC

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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3,840,059 + OKFHMN_19730 0.19 -1.5
3,840,067 + OKFHMN_19730 0.20 +1.3
3,840,068 - OKFHMN_19730 0.20 -1.8
3,840,178 - OKFHMN_19730 0.30 +1.1
3,840,226 + OKFHMN_19730 0.35 +0.4
3,840,339 - OKFHMN_19730 0.45 +0.5
3,840,648 - OKFHMN_19730 0.75 -0.3
3,840,717 + OKFHMN_19730 0.81 -0.8
3,840,785 - OKFHMN_19730 0.88 +0.9
3,841,134 + OKFHMN_19735 0.84 -0.8
3,841,312 - -1.3
3,841,379 + +0.4
3,841,677 + araC OKFHMN_19740 0.23 -0.5
3,841,708 - araC OKFHMN_19740 0.27 +0.5
3,841,762 - araC OKFHMN_19740 0.34 +0.5
3,841,958 - araC OKFHMN_19740 0.60 +0.9

Or see this region's nucleotide sequence