Strain Fitness in Escherichia coli ECRC100 around OKFHMN_18720

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntcca and ygiM are separated by 63 nucleotidesygiM and ygiF are separated by 241 nucleotides OKFHMN_18715: cca - fused tRNA nucleotidyltransferase/2',3'-cyclic phosphodiesterase/2' nucleotidase/phosphatase Cca, at 3,633,738 to 3,634,976 cca OKFHMN_18720: ygiM - TIGR04211 family SH3 domain-containing protein, at 3,635,040 to 3,635,660 ygiM OKFHMN_18725: ygiF - inorganic triphosphatase, at 3,635,902 to 3,637,203 ygiF Position (kb) 3635 3636Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3635.012 kb on - strandat 3635.015 kb on - strandat 3635.015 kb on - strandat 3635.135 kb on - strand, within ygiMat 3635.138 kb on + strand, within ygiMat 3635.138 kb on + strand, within ygiMat 3635.138 kb on + strand, within ygiMat 3635.340 kb on - strand, within ygiMat 3635.406 kb on - strand, within ygiMat 3635.406 kb on - strand, within ygiMat 3635.406 kb on - strand, within ygiMat 3635.484 kb on + strand, within ygiMat 3635.484 kb on + strand, within ygiMat 3635.485 kb on - strand, within ygiMat 3635.485 kb on - strand, within ygiMat 3635.487 kb on + strand, within ygiMat 3635.488 kb on - strand, within ygiMat 3635.561 kb on + strand, within ygiMat 3635.561 kb on + strand, within ygiMat 3635.561 kb on + strand, within ygiMat 3635.581 kb on + strand, within ygiMat 3635.618 kb on + strandat 3635.635 kb on - strandat 3635.695 kb on + strandat 3635.824 kb on - strandat 3635.826 kb on + strandat 3635.830 kb on + strandat 3635.851 kb on + strandat 3635.894 kb on + strandat 3635.895 kb on - strandat 3635.895 kb on - strandat 3635.922 kb on - strandat 3635.929 kb on - strandat 3636.015 kb on + strandat 3636.066 kb on - strand, within ygiFat 3636.069 kb on + strand, within ygiFat 3636.070 kb on - strand, within ygiFat 3636.092 kb on - strand, within ygiFat 3636.134 kb on + strand, within ygiFat 3636.152 kb on - strand, within ygiFat 3636.153 kb on + strand, within ygiFat 3636.154 kb on - strand, within ygiFat 3636.154 kb on - strand, within ygiF

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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3,635,012 - -0.1
3,635,015 - +0.3
3,635,015 - -0.5
3,635,135 - ygiM OKFHMN_18720 0.15 -0.3
3,635,138 + ygiM OKFHMN_18720 0.16 +0.4
3,635,138 + ygiM OKFHMN_18720 0.16 -1.2
3,635,138 + ygiM OKFHMN_18720 0.16 -0.7
3,635,340 - ygiM OKFHMN_18720 0.48 +0.3
3,635,406 - ygiM OKFHMN_18720 0.59 -0.6
3,635,406 - ygiM OKFHMN_18720 0.59 +0.1
3,635,406 - ygiM OKFHMN_18720 0.59 +0.0
3,635,484 + ygiM OKFHMN_18720 0.71 -0.7
3,635,484 + ygiM OKFHMN_18720 0.71 +0.1
3,635,485 - ygiM OKFHMN_18720 0.72 +0.4
3,635,485 - ygiM OKFHMN_18720 0.72 -0.9
3,635,487 + ygiM OKFHMN_18720 0.72 +1.3
3,635,488 - ygiM OKFHMN_18720 0.72 +0.3
3,635,561 + ygiM OKFHMN_18720 0.84 -0.2
3,635,561 + ygiM OKFHMN_18720 0.84 -2.8
3,635,561 + ygiM OKFHMN_18720 0.84 +0.6
3,635,581 + ygiM OKFHMN_18720 0.87 -2.5
3,635,618 + -0.4
3,635,635 - -1.9
3,635,695 + +0.1
3,635,824 - +0.4
3,635,826 + +1.1
3,635,830 + -0.0
3,635,851 + +0.1
3,635,894 + -0.3
3,635,895 - -0.1
3,635,895 - -0.8
3,635,922 - +0.3
3,635,929 - -0.2
3,636,015 + +3.3
3,636,066 - ygiF OKFHMN_18725 0.13 -1.7
3,636,069 + ygiF OKFHMN_18725 0.13 +0.0
3,636,070 - ygiF OKFHMN_18725 0.13 +0.6
3,636,092 - ygiF OKFHMN_18725 0.15 -0.4
3,636,134 + ygiF OKFHMN_18725 0.18 -1.2
3,636,152 - ygiF OKFHMN_18725 0.19 -0.6
3,636,153 + ygiF OKFHMN_18725 0.19 +0.9
3,636,154 - ygiF OKFHMN_18725 0.19 +0.6
3,636,154 - ygiF OKFHMN_18725 0.19 -2.2

Or see this region's nucleotide sequence