Strain Fitness in Escherichia coli ECRC100 around OKFHMN_17005

Experiment: L-Arabinose

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Arabinose
3,317,919	+	gntX	OKFHMN_16995	0.84	-0.1
3,317,976	+				+0.0
3,317,977	-				+1.9
3,317,997	+				-2.3
3,318,006	+				+0.3
3,318,026	+				+0.3
3,318,026	+				+0.7
3,318,026	+				+0.1
3,318,026	+				+0.7
3,318,026	+				-0.3
3,318,026	+				-0.5
3,318,027	-				+0.3
3,318,027	-				-0.2
3,318,027	-				-0.0
3,318,027	-				+1.1
3,318,040	+				+0.6
3,318,041	-				-0.1
3,318,058	+				-2.0
3,318,069	+				-0.8
3,318,069	+				+0.2
3,318,069	+				-0.1
3,318,171	+	bioH	OKFHMN_17000	0.14	+0.3
3,318,171	+	bioH	OKFHMN_17000	0.14	-0.6
3,318,183	+	bioH	OKFHMN_17000	0.15	+0.2
3,318,299	+	bioH	OKFHMN_17000	0.30	+0.8
3,318,647	+	bioH	OKFHMN_17000	0.76	-0.0
3,318,647	+	bioH	OKFHMN_17000	0.76	+0.0
3,318,670	+	bioH	OKFHMN_17000	0.79	-1.1
3,318,670	+	bioH	OKFHMN_17000	0.79	-0.3
3,318,671	-	bioH	OKFHMN_17000	0.79	-0.6
3,318,671	-	bioH	OKFHMN_17000	0.79	-0.7
3,318,671	-	bioH	OKFHMN_17000	0.79	+0.7
3,318,671	-	bioH	OKFHMN_17000	0.79	+0.4
3,318,721	-	bioH	OKFHMN_17000	0.85	+0.2
3,318,745	+	bioH	OKFHMN_17000	0.88	+0.4
3,318,746	-	bioH	OKFHMN_17000	0.88	-0.6
3,318,746	-	bioH	OKFHMN_17000	0.88	+0.2
3,318,832	+				-1.5
3,318,945	+				-0.7
3,318,954	+	rpnA	OKFHMN_17005	0.11	+0.2
3,318,956	+	rpnA	OKFHMN_17005	0.11	+0.0
3,318,957	-	rpnA	OKFHMN_17005	0.11	-0.5
3,318,957	-	rpnA	OKFHMN_17005	0.11	+0.6
3,318,957	-	rpnA	OKFHMN_17005	0.11	-2.0
3,318,957	-	rpnA	OKFHMN_17005	0.11	-3.2
3,318,957	-	rpnA	OKFHMN_17005	0.11	-0.2
3,319,004	+	rpnA	OKFHMN_17005	0.16	+0.6
3,319,092	+	rpnA	OKFHMN_17005	0.26	-0.9
3,319,092	+	rpnA	OKFHMN_17005	0.26	-0.0
3,319,092	+	rpnA	OKFHMN_17005	0.26	+0.2
3,319,140	-	rpnA	OKFHMN_17005	0.32	+0.2
3,319,143	+	rpnA	OKFHMN_17005	0.32	+3.4
3,319,143	+	rpnA	OKFHMN_17005	0.32	+0.7
3,319,147	-	rpnA	OKFHMN_17005	0.33	+0.4
3,319,165	-	rpnA	OKFHMN_17005	0.35	+0.1
3,319,193	+	rpnA	OKFHMN_17005	0.38	-0.2
3,319,194	-	rpnA	OKFHMN_17005	0.38	+0.5
3,319,207	-	rpnA	OKFHMN_17005	0.39	+0.3
3,319,207	-	rpnA	OKFHMN_17005	0.39	+0.2
3,319,265	+	rpnA	OKFHMN_17005	0.46	+0.7
3,319,291	+	rpnA	OKFHMN_17005	0.49	-1.2
3,319,364	+	rpnA	OKFHMN_17005	0.57	+2.1
3,319,373	-	rpnA	OKFHMN_17005	0.58	+0.5
3,319,443	-	rpnA	OKFHMN_17005	0.66	-0.1
3,319,507	+	rpnA	OKFHMN_17005	0.73	-0.8
3,319,507	+	rpnA	OKFHMN_17005	0.73	-0.8
3,319,507	+	rpnA	OKFHMN_17005	0.73	-1.5
3,319,507	+	rpnA	OKFHMN_17005	0.73	+0.2
3,319,507	+	rpnA	OKFHMN_17005	0.73	+0.0
3,319,507	+	rpnA	OKFHMN_17005	0.73	-0.9
3,319,507	+	rpnA	OKFHMN_17005	0.73	+0.2
3,319,508	-	rpnA	OKFHMN_17005	0.74	-0.4
3,319,508	-	rpnA	OKFHMN_17005	0.74	+1.6
3,319,508	-	rpnA	OKFHMN_17005	0.74	-1.3
3,319,513	+	rpnA	OKFHMN_17005	0.74	-0.7
3,319,513	+	rpnA	OKFHMN_17005	0.74	-1.0
3,319,514	-	rpnA	OKFHMN_17005	0.74	-1.0
3,319,514	-	rpnA	OKFHMN_17005	0.74	+0.2
3,319,558	+	rpnA	OKFHMN_17005	0.79	+0.2
3,319,558	+	rpnA	OKFHMN_17005	0.79	-0.4
3,319,644	+	rpnA	OKFHMN_17005	0.89	+0.9
3,319,777	-				+1.3
3,319,841	+				-0.4
3,319,841	+				+1.8
3,319,842	-				-0.4
3,319,842	-				-0.3
3,319,842	-				-0.8
3,319,995	+	feoC	OKFHMN_17010	0.22	+0.4
3,320,114	-	feoC	OKFHMN_17010	0.73	+3.4
3,320,166	+				+0.9
3,320,166	+				-0.1
3,320,167	-				+1.0
3,320,216	+				-1.7
3,320,216	+				+0.3
3,320,216	+				+1.4
3,320,216	+				+0.7
3,320,217	-				-0.0
3,320,217	-				+0.0
3,320,217	-				+0.9
3,320,217	-				+0.5
3,320,217	-				-1.3
3,320,217	-				+0.6
3,320,217	-				+0.2
3,320,221	-				-0.5
3,320,221	-				-1.2
3,320,298	-				+1.0
3,320,298	-				+1.3
3,320,333	-				-0.4
3,320,333	-				+0.7
3,320,351	-				+0.2
3,320,365	+				+0.0
3,320,365	+				+0.4
3,320,468	+	feoB	OKFHMN_17015	0.12	-2.5
3,320,468	+	feoB	OKFHMN_17015	0.12	-0.4
3,320,469	-	feoB	OKFHMN_17015	0.13	+1.7
3,320,475	+	feoB	OKFHMN_17015	0.13	+0.9
3,320,475	+	feoB	OKFHMN_17015	0.13	+1.6
3,320,476	-	feoB	OKFHMN_17015	0.13	-0.6
3,320,476	-	feoB	OKFHMN_17015	0.13	-0.2
3,320,479	+	feoB	OKFHMN_17015	0.13	+1.2
3,320,479	+	feoB	OKFHMN_17015	0.13	+0.6
3,320,480	-	feoB	OKFHMN_17015	0.13	-1.0
3,320,480	-	feoB	OKFHMN_17015	0.13	+0.8
3,320,480	-	feoB	OKFHMN_17015	0.13	-0.6
3,320,501	-	feoB	OKFHMN_17015	0.14	+0.7
3,320,649	+	feoB	OKFHMN_17015	0.20	+0.1
3,320,678	+	feoB	OKFHMN_17015	0.22	+2.1
3,320,726	-	feoB	OKFHMN_17015	0.24	+1.9