Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt slp and OKFHMN_16370 are separated by 353 nucleotides OKFHMN_16370 and arsC are separated by 626 nucleotides
OKFHMN_16365: slp - outer membrane lipoprotein Slp, at 3,187,443 to 3,188,009
slp
OKFHMN_16370: OKFHMN_16370 - YhiS, at 3,188,363 to 3,189,478
_16370
OKFHMN_16375: arsC - glutaredoxin-dependent arsenate reductase, at 3,190,105 to 3,190,530
arsC
Position (kb) 3188
3189
3190 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 3187.366 kb on + strand at 3187.444 kb on + strand at 3187.445 kb on - strand at 3187.486 kb on + strand at 3187.487 kb on - strand at 3187.487 kb on - strand at 3187.489 kb on + strand at 3187.490 kb on - strand at 3187.528 kb on + strand, within slp at 3187.547 kb on + strand, within slp at 3187.549 kb on + strand, within slp at 3187.550 kb on - strand, within slp at 3187.557 kb on - strand, within slp at 3187.599 kb on - strand, within slp at 3187.599 kb on - strand, within slp at 3187.616 kb on + strand, within slp at 3187.618 kb on + strand, within slp at 3187.629 kb on - strand, within slp at 3187.673 kb on + strand, within slp at 3187.690 kb on + strand, within slp at 3187.742 kb on - strand, within slp at 3187.768 kb on + strand, within slp at 3187.769 kb on - strand, within slp at 3187.769 kb on - strand, within slp at 3187.772 kb on + strand, within slp at 3187.772 kb on + strand, within slp at 3187.773 kb on - strand, within slp at 3187.798 kb on - strand, within slp at 3187.824 kb on - strand, within slp at 3187.867 kb on + strand, within slp at 3187.867 kb on + strand, within slp at 3187.868 kb on - strand, within slp at 3187.869 kb on + strand, within slp at 3187.953 kb on - strand at 3188.045 kb on + strand at 3188.097 kb on - strand at 3188.687 kb on - strand, within OKFHMN_16370 at 3189.065 kb on - strand, within OKFHMN_16370 at 3189.118 kb on + strand, within OKFHMN_16370 at 3189.125 kb on - strand, within OKFHMN_16370 at 3189.140 kb on + strand, within OKFHMN_16370 at 3189.191 kb on - strand, within OKFHMN_16370 at 3189.197 kb on - strand, within OKFHMN_16370 at 3189.316 kb on - strand, within OKFHMN_16370 at 3189.798 kb on - strand at 3189.894 kb on - strand at 3189.989 kb on - strand at 3190.097 kb on + strand at 3190.097 kb on + strand at 3190.098 kb on - strand at 3190.430 kb on + strand, within arsC at 3190.438 kb on - strand, within arsC
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 3,187,366 + -0.2 3,187,444 + -0.3 3,187,445 - -0.0 3,187,486 + -0.3 3,187,487 - +0.1 3,187,487 - -0.9 3,187,489 + +0.8 3,187,490 - +0.8 3,187,528 + slp OKFHMN_16365 0.15 +0.6 3,187,547 + slp OKFHMN_16365 0.18 +1.6 3,187,549 + slp OKFHMN_16365 0.19 -0.2 3,187,550 - slp OKFHMN_16365 0.19 +0.2 3,187,557 - slp OKFHMN_16365 0.20 -1.1 3,187,599 - slp OKFHMN_16365 0.28 -0.1 3,187,599 - slp OKFHMN_16365 0.28 +0.3 3,187,616 + slp OKFHMN_16365 0.31 +2.0 3,187,618 + slp OKFHMN_16365 0.31 -0.5 3,187,629 - slp OKFHMN_16365 0.33 +2.4 3,187,673 + slp OKFHMN_16365 0.41 -1.2 3,187,690 + slp OKFHMN_16365 0.44 +0.2 3,187,742 - slp OKFHMN_16365 0.53 +0.0 3,187,768 + slp OKFHMN_16365 0.57 +0.1 3,187,769 - slp OKFHMN_16365 0.57 -0.5 3,187,769 - slp OKFHMN_16365 0.57 -0.0 3,187,772 + slp OKFHMN_16365 0.58 -0.1 3,187,772 + slp OKFHMN_16365 0.58 +0.5 3,187,773 - slp OKFHMN_16365 0.58 +2.0 3,187,798 - slp OKFHMN_16365 0.63 -2.2 3,187,824 - slp OKFHMN_16365 0.67 -0.9 3,187,867 + slp OKFHMN_16365 0.75 +1.6 3,187,867 + slp OKFHMN_16365 0.75 +1.2 3,187,868 - slp OKFHMN_16365 0.75 -0.0 3,187,869 + slp OKFHMN_16365 0.75 +0.5 3,187,953 - +0.3 3,188,045 + -2.0 3,188,097 - +0.9 3,188,687 - OKFHMN_16370 0.29 -2.7 3,189,065 - OKFHMN_16370 0.63 +1.3 3,189,118 + OKFHMN_16370 0.68 -0.7 3,189,125 - OKFHMN_16370 0.68 +0.3 3,189,140 + OKFHMN_16370 0.70 -1.9 3,189,191 - OKFHMN_16370 0.74 +0.2 3,189,197 - OKFHMN_16370 0.75 +0.6 3,189,316 - OKFHMN_16370 0.85 +0.2 3,189,798 - -3.6 3,189,894 - +0.3 3,189,989 - +0.7 3,190,097 + +0.5 3,190,097 + +0.6 3,190,098 - +0.4 3,190,430 + arsC OKFHMN_16375 0.76 +2.0 3,190,438 - arsC OKFHMN_16375 0.78 +0.4
Or see this region's nucleotide sequence