Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ler and escE are separated by 14 nucleotides escE and cesAB are separated by 12 nucleotides cesAB and escK overlap by 4 nucleotides escK and escL overlap by 14 nucleotides escL and escR are separated by 4 nucleotides
OKFHMN_15265: ler - transcription regulator Ler, at 2,954,922 to 2,955,293
ler
OKFHMN_15270: escE - chaperone for EscF, at 2,955,308 to 2,955,526
escE
OKFHMN_15275: cesAB - chaperone for EspA and EspB, at 2,955,539 to 2,955,853
cesAB
OKFHMN_15280: escK - type III secretion system sorting platform component, at 2,955,850 to 2,956,449
escK
OKFHMN_15285: escL - negative regulator EscL, stator protein, at 2,956,436 to 2,957,089
escL
OKFHMN_15290: escR - Type III secretion systemminor export apparatus protein EscR, at 2,957,094 to 2,957,747
escR
Position (kb)
2955
2956
2957 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2954.898 kb on + strand at 2954.972 kb on - strand, within ler at 2955.060 kb on - strand, within ler at 2955.095 kb on + strand, within ler at 2955.148 kb on - strand, within ler at 2955.757 kb on + strand, within cesAB at 2955.838 kb on + strand at 2955.971 kb on + strand, within escK at 2956.867 kb on + strand, within escL at 2956.954 kb on + strand, within escL
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 2,954,898 + +0.5 2,954,972 - ler OKFHMN_15265 0.13 +0.4 2,955,060 - ler OKFHMN_15265 0.37 +1.8 2,955,095 + ler OKFHMN_15265 0.47 +0.4 2,955,148 - ler OKFHMN_15265 0.61 +1.0 2,955,757 + cesAB OKFHMN_15275 0.69 +1.9 2,955,838 + +0.7 2,955,971 + escK OKFHMN_15280 0.20 -2.1 2,956,867 + escL OKFHMN_15285 0.66 -0.4 2,956,954 + escL OKFHMN_15285 0.79 +0.1
Or see this region's nucleotide sequence