Strain Fitness in Escherichia coli ECRC100 around OKFHMN_15280

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntler and escE are separated by 14 nucleotidesescE and cesAB are separated by 12 nucleotidescesAB and escK overlap by 4 nucleotidesescK and escL overlap by 14 nucleotidesescL and escR are separated by 4 nucleotides OKFHMN_15265: ler - transcription regulator Ler, at 2,954,922 to 2,955,293 ler OKFHMN_15270: escE - chaperone for EscF, at 2,955,308 to 2,955,526 escE OKFHMN_15275: cesAB - chaperone for EspA and EspB, at 2,955,539 to 2,955,853 cesAB OKFHMN_15280: escK - type III secretion system sorting platform component, at 2,955,850 to 2,956,449 escK OKFHMN_15285: escL - negative regulator EscL, stator protein, at 2,956,436 to 2,957,089 escL OKFHMN_15290: escR - Type III secretion systemminor export apparatus protein EscR, at 2,957,094 to 2,957,747 escR Position (kb) 2955 2956 2957Strain fitness (log2 ratio) -2 -1 0 1 2at 2954.898 kb on + strandat 2954.972 kb on - strand, within lerat 2955.060 kb on - strand, within lerat 2955.095 kb on + strand, within lerat 2955.148 kb on - strand, within lerat 2955.757 kb on + strand, within cesABat 2955.838 kb on + strandat 2955.971 kb on + strand, within escKat 2956.867 kb on + strand, within escLat 2956.954 kb on + strand, within escL

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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2,954,898 + +0.5
2,954,972 - ler OKFHMN_15265 0.13 +0.4
2,955,060 - ler OKFHMN_15265 0.37 +1.8
2,955,095 + ler OKFHMN_15265 0.47 +0.4
2,955,148 - ler OKFHMN_15265 0.61 +1.0
2,955,757 + cesAB OKFHMN_15275 0.69 +1.9
2,955,838 + +0.7
2,955,971 + escK OKFHMN_15280 0.20 -2.1
2,956,867 + escL OKFHMN_15285 0.66 -0.4
2,956,954 + escL OKFHMN_15285 0.79 +0.1

Or see this region's nucleotide sequence