Strain Fitness in Escherichia coli ECRC100 around OKFHMN_15020

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntdnaA and dnaN are separated by 4 nucleotidesdnaN and recF overlap by 1 nucleotides OKFHMN_15010: dnaA - chromosomal replication initiator protein DnaA, at 2,905,117 to 2,906,520 dnaA OKFHMN_15020: dnaN - DNA polymerase III subunit beta, at 2,906,525 to 2,907,625 dnaN OKFHMN_15025: recF - DNA replication/repair protein RecF, at 2,907,625 to 2,908,698 recF Position (kb) 2906 2907 2908Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 2907.623 kb on + strandat 2907.754 kb on + strand, within recFat 2907.755 kb on - strand, within recFat 2907.757 kb on - strand, within recFat 2907.845 kb on + strand, within recFat 2907.845 kb on + strand, within recFat 2907.934 kb on - strand, within recFat 2907.991 kb on - strand, within recFat 2907.996 kb on - strand, within recFat 2908.015 kb on + strand, within recFat 2908.192 kb on - strand, within recFat 2908.207 kb on + strand, within recFat 2908.208 kb on - strand, within recFat 2908.240 kb on - strand, within recFat 2908.240 kb on - strand, within recFat 2908.312 kb on + strand, within recFat 2908.312 kb on + strand, within recFat 2908.313 kb on - strand, within recFat 2908.313 kb on - strand, within recFat 2908.356 kb on - strand, within recFat 2908.360 kb on + strand, within recFat 2908.391 kb on + strand, within recFat 2908.391 kb on + strand, within recFat 2908.425 kb on + strand, within recFat 2908.425 kb on + strand, within recFat 2908.425 kb on + strand, within recFat 2908.425 kb on + strand, within recFat 2908.426 kb on - strand, within recFat 2908.426 kb on - strand, within recFat 2908.426 kb on - strand, within recFat 2908.447 kb on - strand, within recFat 2908.447 kb on - strand, within recFat 2908.466 kb on + strand, within recFat 2908.527 kb on - strand, within recF

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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2,907,623 + -0.3
2,907,754 + recF OKFHMN_15025 0.12 +0.3
2,907,755 - recF OKFHMN_15025 0.12 +1.0
2,907,757 - recF OKFHMN_15025 0.12 -0.4
2,907,845 + recF OKFHMN_15025 0.20 -2.6
2,907,845 + recF OKFHMN_15025 0.20 -3.8
2,907,934 - recF OKFHMN_15025 0.29 +0.9
2,907,991 - recF OKFHMN_15025 0.34 -1.7
2,907,996 - recF OKFHMN_15025 0.35 +0.3
2,908,015 + recF OKFHMN_15025 0.36 +0.7
2,908,192 - recF OKFHMN_15025 0.53 -3.7
2,908,207 + recF OKFHMN_15025 0.54 +1.9
2,908,208 - recF OKFHMN_15025 0.54 +0.0
2,908,240 - recF OKFHMN_15025 0.57 -0.9
2,908,240 - recF OKFHMN_15025 0.57 +0.4
2,908,312 + recF OKFHMN_15025 0.64 +1.2
2,908,312 + recF OKFHMN_15025 0.64 -0.8
2,908,313 - recF OKFHMN_15025 0.64 -1.6
2,908,313 - recF OKFHMN_15025 0.64 -4.8
2,908,356 - recF OKFHMN_15025 0.68 +0.7
2,908,360 + recF OKFHMN_15025 0.68 +0.6
2,908,391 + recF OKFHMN_15025 0.71 -1.5
2,908,391 + recF OKFHMN_15025 0.71 -0.8
2,908,425 + recF OKFHMN_15025 0.74 -0.2
2,908,425 + recF OKFHMN_15025 0.74 +0.1
2,908,425 + recF OKFHMN_15025 0.74 -2.2
2,908,425 + recF OKFHMN_15025 0.74 -0.2
2,908,426 - recF OKFHMN_15025 0.75 -0.2
2,908,426 - recF OKFHMN_15025 0.75 +1.9
2,908,426 - recF OKFHMN_15025 0.75 -0.7
2,908,447 - recF OKFHMN_15025 0.77 +1.0
2,908,447 - recF OKFHMN_15025 0.77 -1.6
2,908,466 + recF OKFHMN_15025 0.78 -0.1
2,908,527 - recF OKFHMN_15025 0.84 +0.8

Or see this region's nucleotide sequence