Strain Fitness in Escherichia coli ECRC100 around OKFHMN_14800

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntatpI and atpB are separated by 8 nucleotidesatpB and atpE are separated by 46 nucleotidesatpE and atpF are separated by 61 nucleotidesatpF and atpH are separated by 14 nucleotides OKFHMN_14795: atpI - F0F1 ATP synthase subunit I, at 2,859,196 to 2,859,576 atpI OKFHMN_14800: atpB - F0F1 ATP synthase subunit A, at 2,859,585 to 2,860,400 atpB OKFHMN_14805: atpE - F0F1 ATP synthase subunit C, at 2,860,447 to 2,860,686 atpE OKFHMN_14810: atpF - F0F1 ATP synthase subunit B, at 2,860,748 to 2,861,218 atpF OKFHMN_14815: atpH - F0F1 ATP synthase subunit delta, at 2,861,233 to 2,861,766 atpH Position (kb) 2859 2860 2861Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2858.622 kb on + strandat 2858.642 kb on - strandat 2858.647 kb on + strandat 2858.647 kb on + strandat 2858.649 kb on + strandat 2858.650 kb on - strandat 2858.657 kb on + strandat 2858.663 kb on + strandat 2858.697 kb on - strandat 2858.715 kb on - strandat 2858.726 kb on - strandat 2858.726 kb on - strandat 2858.767 kb on - strandat 2858.828 kb on - strandat 2858.842 kb on - strandat 2858.874 kb on + strandat 2858.875 kb on - strandat 2858.875 kb on - strandat 2858.911 kb on - strandat 2858.935 kb on - strandat 2858.935 kb on - strandat 2858.955 kb on + strandat 2859.025 kb on + strandat 2859.025 kb on + strandat 2859.068 kb on - strandat 2859.071 kb on + strandat 2859.137 kb on + strandat 2859.149 kb on + strandat 2859.317 kb on + strand, within atpIat 2859.387 kb on + strand, within atpIat 2859.513 kb on + strand, within atpIat 2859.557 kb on + strandat 2859.557 kb on + strandat 2859.557 kb on + strandat 2860.398 kb on + strandat 2860.398 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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2,858,622 + -0.1
2,858,642 - -0.2
2,858,647 + -0.2
2,858,647 + +0.1
2,858,649 + +0.2
2,858,650 - -0.2
2,858,657 + +0.6
2,858,663 + +2.0
2,858,697 - -0.8
2,858,715 - +0.6
2,858,726 - +0.6
2,858,726 - +0.3
2,858,767 - -1.8
2,858,828 - +0.4
2,858,842 - +0.2
2,858,874 + +0.0
2,858,875 - +0.2
2,858,875 - -1.2
2,858,911 - -0.5
2,858,935 - +0.3
2,858,935 - +0.5
2,858,955 + -0.0
2,859,025 + -0.3
2,859,025 + -0.2
2,859,068 - -1.3
2,859,071 + +0.1
2,859,137 + -0.2
2,859,149 + -3.0
2,859,317 + atpI OKFHMN_14795 0.32 +0.1
2,859,387 + atpI OKFHMN_14795 0.50 -0.2
2,859,513 + atpI OKFHMN_14795 0.83 +0.5
2,859,557 + -1.5
2,859,557 + -0.3
2,859,557 + +0.1
2,860,398 + -0.8
2,860,398 + +0.3

Or see this region's nucleotide sequence