Strain Fitness in Escherichia coli ECRC100 around OKFHMN_13985

Experiment: L-Arabinose

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntyiiE and OKFHMN_13985 are separated by 693 nucleotidesOKFHMN_13985 and OKFHMN_13990 are separated by 6 nucleotides OKFHMN_13980: yiiE - Uncharacterized protein YiiE, at 2,696,896 to 2,697,114 yiiE OKFHMN_13985: OKFHMN_13985 - Transposase, at 2,697,808 to 2,698,722 _13985 OKFHMN_13990: OKFHMN_13990 - hypothetical protein, at 2,698,729 to 2,699,622 _13990 Position (kb) 2697 2698 2699Strain fitness (log2 ratio) -2 -1 0 1 2at 2696.844 kb on - strandat 2696.913 kb on + strandat 2697.320 kb on + strandat 2697.397 kb on + strandat 2697.397 kb on + strandat 2697.424 kb on + strandat 2697.497 kb on + strandat 2697.602 kb on - strandat 2697.659 kb on - strandat 2697.973 kb on + strand, within OKFHMN_13985at 2697.973 kb on + strand, within OKFHMN_13985at 2698.397 kb on + strand, within OKFHMN_13985at 2698.398 kb on - strand, within OKFHMN_13985at 2698.398 kb on - strand, within OKFHMN_13985at 2698.499 kb on + strand, within OKFHMN_13985at 2698.525 kb on - strand, within OKFHMN_13985at 2698.525 kb on - strand, within OKFHMN_13985at 2698.548 kb on + strand, within OKFHMN_13985at 2698.555 kb on + strand, within OKFHMN_13985at 2698.596 kb on + strand, within OKFHMN_13985at 2698.830 kb on - strand, within OKFHMN_13990at 2698.923 kb on + strand, within OKFHMN_13990at 2699.074 kb on - strand, within OKFHMN_13990at 2699.102 kb on + strand, within OKFHMN_13990at 2699.348 kb on - strand, within OKFHMN_13990

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
remove
2,696,844 - +0.2
2,696,913 + +0.1
2,697,320 + +0.1
2,697,397 + -0.2
2,697,397 + +0.1
2,697,424 + +1.2
2,697,497 + +0.6
2,697,602 - -0.7
2,697,659 - +1.2
2,697,973 + OKFHMN_13985 0.18 +1.8
2,697,973 + OKFHMN_13985 0.18 +1.4
2,698,397 + OKFHMN_13985 0.64 +1.9
2,698,398 - OKFHMN_13985 0.64 -2.4
2,698,398 - OKFHMN_13985 0.64 +0.3
2,698,499 + OKFHMN_13985 0.76 -0.1
2,698,525 - OKFHMN_13985 0.78 -0.0
2,698,525 - OKFHMN_13985 0.78 +0.2
2,698,548 + OKFHMN_13985 0.81 -0.6
2,698,555 + OKFHMN_13985 0.82 -0.5
2,698,596 + OKFHMN_13985 0.86 -0.1
2,698,830 - OKFHMN_13990 0.11 +0.0
2,698,923 + OKFHMN_13990 0.22 +0.3
2,699,074 - OKFHMN_13990 0.39 +0.3
2,699,102 + OKFHMN_13990 0.42 -0.0
2,699,348 - OKFHMN_13990 0.69 -0.5

Or see this region's nucleotide sequence