Strain Fitness in Escherichia coli ECRC100 around OKFHMN_11135

Experiment: L-Arabinose

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Arabinose
2,105,754	+	creD	OKFHMN_11130	0.34	+0.2
2,105,755	-	creD	OKFHMN_11130	0.34	+0.5
2,105,758	+	creD	OKFHMN_11130	0.34	+1.0
2,105,758	+	creD	OKFHMN_11130	0.34	+0.8
2,105,758	+	creD	OKFHMN_11130	0.34	+0.4
2,105,758	+	creD	OKFHMN_11130	0.34	+0.8
2,105,774	+	creD	OKFHMN_11130	0.35	+0.1
2,105,774	+	creD	OKFHMN_11130	0.35	+0.3
2,105,775	-	creD	OKFHMN_11130	0.36	-0.4
2,105,782	-	creD	OKFHMN_11130	0.36	+0.1
2,105,876	-	creD	OKFHMN_11130	0.43	+2.0
2,105,876	-	creD	OKFHMN_11130	0.43	+2.0
2,105,920	+	creD	OKFHMN_11130	0.46	+0.1
2,105,921	-	creD	OKFHMN_11130	0.46	+0.7
2,106,053	-	creD	OKFHMN_11130	0.56	-0.6
2,106,100	+	creD	OKFHMN_11130	0.60	+1.3
2,106,220	+	creD	OKFHMN_11130	0.68	+0.8
2,106,241	+	creD	OKFHMN_11130	0.70	+1.8
2,106,242	-	creD	OKFHMN_11130	0.70	+0.2
2,106,296	+	creD	OKFHMN_11130	0.74	+0.2
2,106,296	+	creD	OKFHMN_11130	0.74	+0.5
2,106,324	+	creD	OKFHMN_11130	0.76	-0.7
2,106,324	+	creD	OKFHMN_11130	0.76	+0.2
2,106,442	+	creD	OKFHMN_11130	0.85	-0.3
2,106,442	+	creD	OKFHMN_11130	0.85	-0.9
2,106,442	+	creD	OKFHMN_11130	0.85	-0.2
2,106,443	-	creD	OKFHMN_11130	0.85	+0.1
2,106,443	-	creD	OKFHMN_11130	0.85	+0.4
2,106,443	-	creD	OKFHMN_11130	0.85	-3.1
2,106,443	-	creD	OKFHMN_11130	0.85	-2.0
2,106,464	-	creD	OKFHMN_11130	0.86	+0.5
2,106,470	-	creD	OKFHMN_11130	0.87	+0.3
2,106,503	-	creD	OKFHMN_11130	0.89	-1.5
2,106,596	+				+0.3
2,106,596	+				-0.5
2,106,597	-				-0.2
2,106,597	-				-2.1
2,106,646	+				+0.3
2,106,647	-				+0.6
2,106,706	-				+0.7
2,106,706	-				+1.1
2,106,898	+	creC	OKFHMN_11135	0.14	+0.6
2,106,962	+	creC	OKFHMN_11135	0.18	-0.0
2,107,066	+	creC	OKFHMN_11135	0.25	-0.5
2,107,131	-	creC	OKFHMN_11135	0.30	-2.6
2,107,131	-	creC	OKFHMN_11135	0.30	+0.7
2,107,193	+	creC	OKFHMN_11135	0.34	+0.0
2,107,194	-	creC	OKFHMN_11135	0.34	-1.2
2,107,194	-	creC	OKFHMN_11135	0.34	-0.1
2,107,205	+	creC	OKFHMN_11135	0.35	-2.1
2,107,205	+	creC	OKFHMN_11135	0.35	+0.5
2,107,219	+	creC	OKFHMN_11135	0.36	+0.3
2,107,219	+	creC	OKFHMN_11135	0.36	+0.4
2,107,329	-	creC	OKFHMN_11135	0.44	+0.3
2,107,363	+	creC	OKFHMN_11135	0.46	-2.6
2,107,364	-	creC	OKFHMN_11135	0.46	-1.7
2,107,364	-	creC	OKFHMN_11135	0.46	-0.1
2,107,417	+	creC	OKFHMN_11135	0.50	+0.5
2,107,649	-	creC	OKFHMN_11135	0.66	-1.6
2,107,649	-	creC	OKFHMN_11135	0.66	+0.1
2,107,649	-	creC	OKFHMN_11135	0.66	+0.3
2,107,683	+	creC	OKFHMN_11135	0.69	-0.5
2,107,683	+	creC	OKFHMN_11135	0.69	-0.3
2,107,683	+	creC	OKFHMN_11135	0.69	+1.4
2,107,683	+	creC	OKFHMN_11135	0.69	-0.3
2,107,684	-	creC	OKFHMN_11135	0.69	+0.3
2,107,684	-	creC	OKFHMN_11135	0.69	-0.7
2,107,684	-	creC	OKFHMN_11135	0.69	+2.5
2,107,684	-	creC	OKFHMN_11135	0.69	+1.2
2,107,684	-	creC	OKFHMN_11135	0.69	+0.6
2,107,684	-	creC	OKFHMN_11135	0.69	+0.6
2,107,684	-	creC	OKFHMN_11135	0.69	+0.2
2,107,738	-	creC	OKFHMN_11135	0.73	+0.2
2,107,779	+	creC	OKFHMN_11135	0.75	-0.2
2,107,780	-	creC	OKFHMN_11135	0.76	-1.1
2,107,840	+	creC	OKFHMN_11135	0.80	+0.0
2,107,840	+	creC	OKFHMN_11135	0.80	+0.3
2,107,841	-	creC	OKFHMN_11135	0.80	-0.5
2,107,842	+	creC	OKFHMN_11135	0.80	+0.6
2,107,843	-	creC	OKFHMN_11135	0.80	+0.2
2,107,843	-	creC	OKFHMN_11135	0.80	-1.7
2,107,852	-	creC	OKFHMN_11135	0.81	+0.3
2,107,882	+	creC	OKFHMN_11135	0.83	-0.0
2,107,907	+	creC	OKFHMN_11135	0.84	-0.5
2,108,129	+				+1.7
2,108,130	-				+0.6
2,108,166	+				+0.4
2,108,167	-				-1.0
2,108,247	-	creB	OKFHMN_11140	0.17	-0.3
2,108,247	-	creB	OKFHMN_11140	0.17	-1.1
2,108,346	-	creB	OKFHMN_11140	0.32	-0.1
2,108,516	+	creB	OKFHMN_11140	0.56	+0.9
2,108,585	-	creB	OKFHMN_11140	0.66	-0.1
2,108,818	-				-0.3
2,108,818	-				+1.0
2,108,831	+				-1.1
2,108,831	+				+1.0
2,108,832	-				-0.2
2,108,939	+	creA	OKFHMN_11145	0.23	-0.6
2,108,939	+	creA	OKFHMN_11145	0.23	+0.1
2,108,964	+	creA	OKFHMN_11145	0.28	+0.0
2,108,993	-	creA	OKFHMN_11145	0.34	-2.4
2,108,993	-	creA	OKFHMN_11145	0.34	+0.6
2,109,082	-	creA	OKFHMN_11145	0.53	+0.5
2,109,082	-	creA	OKFHMN_11145	0.53	-0.2
2,109,108	+	creA	OKFHMN_11145	0.59	-0.7