Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt arfB and yaeQ overlap by 4 nucleotides yaeQ and yaeP are separated by 165 nucleotides yaeP and rof overlap by 14 nucleotides rof and tilS are separated by 52 nucleotides
OKFHMN_10095: arfB - aminoacyl-tRNA hydrolase, at 1,884,605 to 1,885,015
arfB
OKFHMN_10100: yaeQ - Uncharacterized protein YaeQ, at 1,885,012 to 1,885,557
yaeQ
OKFHMN_10105: yaeP - YaeP family protein, at 1,885,723 to 1,885,923
yaeP
OKFHMN_10110: rof - Rho-binding antiterminator, at 1,885,910 to 1,886,170
rof
OKFHMN_10115: tilS - tRNA lysidine(34) synthetase TilS, at 1,886,223 to 1,887,518
tilS
Position (kb) 1885
1886 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1884.809 kb on + strand, within arfB at 1884.862 kb on - strand, within arfB at 1884.864 kb on + strand, within arfB at 1884.865 kb on - strand, within arfB at 1884.923 kb on - strand, within arfB at 1885.054 kb on - strand at 1885.059 kb on + strand at 1885.114 kb on - strand, within yaeQ at 1885.233 kb on + strand, within yaeQ at 1885.234 kb on - strand, within yaeQ at 1885.234 kb on - strand, within yaeQ at 1885.234 kb on - strand, within yaeQ at 1885.236 kb on + strand, within yaeQ at 1885.236 kb on + strand, within yaeQ at 1885.237 kb on - strand, within yaeQ at 1885.238 kb on + strand, within yaeQ at 1885.238 kb on + strand, within yaeQ at 1885.239 kb on - strand, within yaeQ at 1885.239 kb on - strand, within yaeQ at 1885.239 kb on - strand, within yaeQ at 1885.242 kb on + strand, within yaeQ at 1885.440 kb on + strand, within yaeQ at 1885.599 kb on - strand at 1885.640 kb on - strand at 1885.641 kb on + strand at 1885.664 kb on + strand at 1885.664 kb on + strand at 1885.742 kb on + strand at 1885.757 kb on - strand, within yaeP at 1885.781 kb on + strand, within yaeP at 1885.782 kb on - strand, within yaeP at 1885.787 kb on - strand, within yaeP at 1885.924 kb on + strand at 1885.924 kb on + strand at 1885.925 kb on - strand at 1885.928 kb on + strand at 1885.928 kb on + strand at 1885.928 kb on + strand at 1885.929 kb on - strand at 1885.986 kb on + strand, within rof at 1886.066 kb on + strand, within rof at 1886.103 kb on + strand, within rof at 1886.103 kb on + strand, within rof at 1886.104 kb on - strand, within rof at 1886.120 kb on - strand, within rof at 1886.195 kb on + strand at 1886.206 kb on - strand at 1886.224 kb on + strand at 1886.225 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 1,884,809 + arfB OKFHMN_10095 0.50 -3.1 1,884,862 - arfB OKFHMN_10095 0.63 +0.3 1,884,864 + arfB OKFHMN_10095 0.63 +0.8 1,884,865 - arfB OKFHMN_10095 0.63 -1.6 1,884,923 - arfB OKFHMN_10095 0.77 -0.2 1,885,054 - -0.2 1,885,059 + +1.5 1,885,114 - yaeQ OKFHMN_10100 0.19 +0.0 1,885,233 + yaeQ OKFHMN_10100 0.40 +1.6 1,885,234 - yaeQ OKFHMN_10100 0.41 -1.2 1,885,234 - yaeQ OKFHMN_10100 0.41 +0.6 1,885,234 - yaeQ OKFHMN_10100 0.41 -0.1 1,885,236 + yaeQ OKFHMN_10100 0.41 +0.3 1,885,236 + yaeQ OKFHMN_10100 0.41 -0.2 1,885,237 - yaeQ OKFHMN_10100 0.41 -0.1 1,885,238 + yaeQ OKFHMN_10100 0.41 +0.4 1,885,238 + yaeQ OKFHMN_10100 0.41 -0.5 1,885,239 - yaeQ OKFHMN_10100 0.42 +1.1 1,885,239 - yaeQ OKFHMN_10100 0.42 -0.1 1,885,239 - yaeQ OKFHMN_10100 0.42 +0.4 1,885,242 + yaeQ OKFHMN_10100 0.42 +0.6 1,885,440 + yaeQ OKFHMN_10100 0.78 +0.3 1,885,599 - -3.0 1,885,640 - +0.8 1,885,641 + +2.5 1,885,664 + +0.3 1,885,664 + +0.8 1,885,742 + +0.7 1,885,757 - yaeP OKFHMN_10105 0.17 -0.2 1,885,781 + yaeP OKFHMN_10105 0.29 -0.1 1,885,782 - yaeP OKFHMN_10105 0.29 +1.3 1,885,787 - yaeP OKFHMN_10105 0.32 +0.6 1,885,924 + +1.0 1,885,924 + +0.7 1,885,925 - +1.1 1,885,928 + +0.5 1,885,928 + +0.8 1,885,928 + +1.0 1,885,929 - -0.2 1,885,986 + rof OKFHMN_10110 0.29 +0.5 1,886,066 + rof OKFHMN_10110 0.60 -1.2 1,886,103 + rof OKFHMN_10110 0.74 +0.1 1,886,103 + rof OKFHMN_10110 0.74 -0.0 1,886,104 - rof OKFHMN_10110 0.74 -0.1 1,886,120 - rof OKFHMN_10110 0.80 +0.7 1,886,195 + +0.2 1,886,206 - -1.6 1,886,224 + -1.6 1,886,225 - +0.2
Or see this region's nucleotide sequence