Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKFHMN_09940 and OKFHMN_09945 are separated by 2 nucleotides OKFHMN_09945 and OKFHMN_09950 overlap by 4 nucleotides OKFHMN_09950 and OKFHMN_09955 are separated by 184 nucleotides OKFHMN_09955 and Asp_trna are separated by 328 nucleotides Asp_trna and dnaQ are separated by 132 nucleotides
OKFHMN_09940: OKFHMN_09940 - Peptidoglycan-binding protein LysM, at 1,859,980 to 1,860,576
_09940
OKFHMN_09945: OKFHMN_09945 - hypothetical protein, at 1,860,579 to 1,861,028
_09945
OKFHMN_09950: OKFHMN_09950 - hypothetical protein, at 1,861,025 to 1,861,321
_09950
OKFHMN_09955: OKFHMN_09955 - Uncharacterized lipoprotein YafT, at 1,861,506 to 1,862,306
_09955
OKFHMN_09960: Asp_trna - tRNA-Asp(gtc), at 1,862,635 to 1,862,711
_trna
OKFHMN_09965: dnaQ - DNA polymerase III subunit epsilon, at 1,862,844 to 1,863,584
dnaQ
Position (kb)
1861
1862
1863 Strain fitness (log2 ratio)
-1
0
1 at 1860.663 kb on - strand, within OKFHMN_09945 at 1860.842 kb on + strand, within OKFHMN_09945 at 1860.928 kb on + strand, within OKFHMN_09945 at 1861.774 kb on - strand, within OKFHMN_09955 at 1861.799 kb on - strand, within OKFHMN_09955 at 1862.152 kb on - strand, within OKFHMN_09955 at 1862.526 kb on + strand at 1862.841 kb on + strand at 1862.846 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 1,860,663 - OKFHMN_09945 0.19 -0.3 1,860,842 + OKFHMN_09945 0.58 -0.8 1,860,928 + OKFHMN_09945 0.78 +0.5 1,861,774 - OKFHMN_09955 0.33 +1.5 1,861,799 - OKFHMN_09955 0.37 +0.5 1,862,152 - OKFHMN_09955 0.81 +0.2 1,862,526 + +1.4 1,862,841 + -0.0 1,862,846 - -0.0
Or see this region's nucleotide sequence