Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt fadE and ivy are separated by 42 nucleotides ivy and yafV are separated by 180 nucleotides
OKFHMN_09780: fadE - acyl-CoA dehydrogenase FadE, at 1,819,264 to 1,821,708
fadE
OKFHMN_09785: ivy - Ivy family C-type lysozyme inhibitor, at 1,821,751 to 1,822,197
ivy
OKFHMN_09790: yafV - 2-oxoglutaramate amidase, at 1,822,378 to 1,823,148
yafV
Position (kb) 1821
1822
1823 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1820.819 kb on - strand, within fadE at 1820.889 kb on + strand, within fadE at 1820.890 kb on - strand, within fadE at 1820.986 kb on + strand, within fadE at 1820.989 kb on + strand, within fadE at 1820.990 kb on - strand, within fadE at 1821.081 kb on + strand, within fadE at 1821.119 kb on - strand, within fadE at 1821.145 kb on + strand, within fadE at 1821.240 kb on - strand, within fadE at 1821.384 kb on + strand, within fadE at 1821.401 kb on - strand, within fadE at 1821.520 kb on - strand at 1821.752 kb on + strand at 1821.889 kb on - strand, within ivy at 1821.943 kb on - strand, within ivy at 1822.028 kb on + strand, within ivy at 1822.028 kb on + strand, within ivy at 1822.029 kb on - strand, within ivy at 1822.029 kb on - strand, within ivy at 1822.029 kb on - strand, within ivy at 1822.033 kb on - strand, within ivy at 1822.062 kb on + strand, within ivy at 1822.063 kb on - strand, within ivy at 1822.191 kb on + strand at 1822.228 kb on - strand at 1822.228 kb on - strand at 1822.298 kb on - strand at 1822.347 kb on + strand at 1822.372 kb on + strand at 1822.372 kb on + strand at 1822.471 kb on - strand, within yafV at 1822.509 kb on + strand, within yafV at 1822.695 kb on + strand, within yafV at 1822.737 kb on + strand, within yafV at 1822.738 kb on - strand, within yafV at 1822.844 kb on - strand, within yafV at 1822.858 kb on + strand, within yafV at 1822.859 kb on - strand, within yafV at 1822.936 kb on + strand, within yafV at 1822.937 kb on - strand, within yafV at 1823.192 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 1,820,819 - fadE OKFHMN_09780 0.64 -0.5 1,820,889 + fadE OKFHMN_09780 0.66 -3.5 1,820,890 - fadE OKFHMN_09780 0.67 -1.5 1,820,986 + fadE OKFHMN_09780 0.70 -1.9 1,820,989 + fadE OKFHMN_09780 0.71 +2.6 1,820,990 - fadE OKFHMN_09780 0.71 -1.7 1,821,081 + fadE OKFHMN_09780 0.74 -1.4 1,821,119 - fadE OKFHMN_09780 0.76 -0.7 1,821,145 + fadE OKFHMN_09780 0.77 -0.2 1,821,240 - fadE OKFHMN_09780 0.81 -0.7 1,821,384 + fadE OKFHMN_09780 0.87 -1.7 1,821,401 - fadE OKFHMN_09780 0.87 -1.1 1,821,520 - -0.1 1,821,752 + -0.4 1,821,889 - ivy OKFHMN_09785 0.31 +0.3 1,821,943 - ivy OKFHMN_09785 0.43 -0.9 1,822,028 + ivy OKFHMN_09785 0.62 +1.8 1,822,028 + ivy OKFHMN_09785 0.62 +0.1 1,822,029 - ivy OKFHMN_09785 0.62 -0.6 1,822,029 - ivy OKFHMN_09785 0.62 +0.6 1,822,029 - ivy OKFHMN_09785 0.62 +0.0 1,822,033 - ivy OKFHMN_09785 0.63 +0.5 1,822,062 + ivy OKFHMN_09785 0.70 +0.1 1,822,063 - ivy OKFHMN_09785 0.70 -0.1 1,822,191 + -0.8 1,822,228 - +0.3 1,822,228 - +0.6 1,822,298 - +0.1 1,822,347 + -2.3 1,822,372 + +0.1 1,822,372 + +0.6 1,822,471 - yafV OKFHMN_09790 0.12 -0.4 1,822,509 + yafV OKFHMN_09790 0.17 -0.8 1,822,695 + yafV OKFHMN_09790 0.41 +0.6 1,822,737 + yafV OKFHMN_09790 0.47 -0.2 1,822,738 - yafV OKFHMN_09790 0.47 +0.1 1,822,844 - yafV OKFHMN_09790 0.60 +0.3 1,822,858 + yafV OKFHMN_09790 0.62 +0.9 1,822,859 - yafV OKFHMN_09790 0.62 -1.1 1,822,936 + yafV OKFHMN_09790 0.72 -0.2 1,822,937 - yafV OKFHMN_09790 0.73 -2.5 1,823,192 - -3.6
Or see this region's nucleotide sequence