Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt alpA and OKFHMN_09335 are separated by 933 nucleotides OKFHMN_09335 and OKFHMN_09340 overlap by 4 nucleotides OKFHMN_09340 and OKFHMN_09345 are separated by 5 nucleotides
OKFHMN_09330: alpA - AlpA family transcriptional regulator, at 1,754,554 to 1,754,814
alpA
OKFHMN_09335: OKFHMN_09335 - septation initiation protein, at 1,755,748 to 1,756,500
_09335
OKFHMN_09340: OKFHMN_09340 - phage polarity suppression protein, at 1,756,497 to 1,757,048
_09340
OKFHMN_09345: OKFHMN_09345 - Ogr/Delta-like zinc finger, at 1,757,054 to 1,757,326
_09345
Position (kb)
1755
1756
1757 Strain fitness (log2 ratio)
-2
-1
0
1 at 1754.816 kb on + strand at 1754.881 kb on + strand at 1755.046 kb on - strand at 1755.048 kb on + strand at 1755.072 kb on + strand at 1755.560 kb on + strand at 1755.608 kb on + strand at 1755.700 kb on + strand at 1755.701 kb on - strand at 1755.701 kb on - strand at 1755.701 kb on - strand at 1755.738 kb on - strand at 1755.886 kb on - strand, within OKFHMN_09335 at 1755.984 kb on - strand, within OKFHMN_09335 at 1756.124 kb on - strand, within OKFHMN_09335 at 1756.182 kb on + strand, within OKFHMN_09335 at 1756.218 kb on - strand, within OKFHMN_09335 at 1756.323 kb on + strand, within OKFHMN_09335 at 1756.323 kb on + strand, within OKFHMN_09335 at 1756.377 kb on + strand, within OKFHMN_09335 at 1756.378 kb on - strand, within OKFHMN_09335 at 1756.446 kb on + strand at 1756.446 kb on + strand at 1756.446 kb on + strand at 1756.447 kb on - strand at 1756.453 kb on - strand at 1756.453 kb on - strand at 1756.568 kb on + strand, within OKFHMN_09340 at 1756.569 kb on - strand, within OKFHMN_09340 at 1756.601 kb on - strand, within OKFHMN_09340 at 1756.639 kb on - strand, within OKFHMN_09340 at 1756.694 kb on + strand, within OKFHMN_09340 at 1756.695 kb on - strand, within OKFHMN_09340 at 1756.854 kb on - strand, within OKFHMN_09340 at 1756.856 kb on - strand, within OKFHMN_09340 at 1756.889 kb on - strand, within OKFHMN_09340 at 1756.920 kb on - strand, within OKFHMN_09340 at 1756.983 kb on + strand, within OKFHMN_09340 at 1756.983 kb on + strand, within OKFHMN_09340 at 1757.030 kb on + strand at 1757.108 kb on + strand, within OKFHMN_09345 at 1757.166 kb on - strand, within OKFHMN_09345 at 1757.174 kb on - strand, within OKFHMN_09345 at 1757.194 kb on + strand, within OKFHMN_09345 at 1757.417 kb on + strand at 1757.417 kb on + strand at 1757.417 kb on + strand at 1757.419 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 1,754,816 + +0.6 1,754,881 + +0.1 1,755,046 - +0.3 1,755,048 + -2.0 1,755,072 + -0.6 1,755,560 + -0.6 1,755,608 + -1.2 1,755,700 + +0.2 1,755,701 - +0.5 1,755,701 - -1.4 1,755,701 - -1.3 1,755,738 - -0.0 1,755,886 - OKFHMN_09335 0.18 +0.4 1,755,984 - OKFHMN_09335 0.31 +0.2 1,756,124 - OKFHMN_09335 0.50 +0.3 1,756,182 + OKFHMN_09335 0.58 -0.3 1,756,218 - OKFHMN_09335 0.62 +0.9 1,756,323 + OKFHMN_09335 0.76 -1.0 1,756,323 + OKFHMN_09335 0.76 -0.6 1,756,377 + OKFHMN_09335 0.84 +0.7 1,756,378 - OKFHMN_09335 0.84 -1.7 1,756,446 + +0.7 1,756,446 + -0.2 1,756,446 + -0.2 1,756,447 - -0.2 1,756,453 - +0.3 1,756,453 - +1.4 1,756,568 + OKFHMN_09340 0.13 +0.7 1,756,569 - OKFHMN_09340 0.13 -1.3 1,756,601 - OKFHMN_09340 0.19 +0.5 1,756,639 - OKFHMN_09340 0.26 -1.0 1,756,694 + OKFHMN_09340 0.36 +1.0 1,756,695 - OKFHMN_09340 0.36 +0.4 1,756,854 - OKFHMN_09340 0.65 +0.2 1,756,856 - OKFHMN_09340 0.65 -0.2 1,756,889 - OKFHMN_09340 0.71 -0.2 1,756,920 - OKFHMN_09340 0.77 +0.3 1,756,983 + OKFHMN_09340 0.88 +0.1 1,756,983 + OKFHMN_09340 0.88 +0.1 1,757,030 + +0.9 1,757,108 + OKFHMN_09345 0.20 -0.2 1,757,166 - OKFHMN_09345 0.41 -0.2 1,757,174 - OKFHMN_09345 0.44 +0.1 1,757,194 + OKFHMN_09345 0.51 +0.1 1,757,417 + +1.2 1,757,417 + -0.2 1,757,417 + +1.7 1,757,419 + -0.4
Or see this region's nucleotide sequence