Strain Fitness in Escherichia coli ECRC100 around OKFHMN_09335

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntalpA and OKFHMN_09335 are separated by 933 nucleotidesOKFHMN_09335 and OKFHMN_09340 overlap by 4 nucleotidesOKFHMN_09340 and OKFHMN_09345 are separated by 5 nucleotides OKFHMN_09330: alpA - AlpA family transcriptional regulator, at 1,754,554 to 1,754,814 alpA OKFHMN_09335: OKFHMN_09335 - septation initiation protein, at 1,755,748 to 1,756,500 _09335 OKFHMN_09340: OKFHMN_09340 - phage polarity suppression protein, at 1,756,497 to 1,757,048 _09340 OKFHMN_09345: OKFHMN_09345 - Ogr/Delta-like zinc finger, at 1,757,054 to 1,757,326 _09345 Position (kb) 1755 1756 1757Strain fitness (log2 ratio) -2 -1 0 1at 1754.816 kb on + strandat 1754.881 kb on + strandat 1755.046 kb on - strandat 1755.048 kb on + strandat 1755.072 kb on + strandat 1755.560 kb on + strandat 1755.608 kb on + strandat 1755.700 kb on + strandat 1755.701 kb on - strandat 1755.701 kb on - strandat 1755.701 kb on - strandat 1755.738 kb on - strandat 1755.886 kb on - strand, within OKFHMN_09335at 1755.984 kb on - strand, within OKFHMN_09335at 1756.124 kb on - strand, within OKFHMN_09335at 1756.182 kb on + strand, within OKFHMN_09335at 1756.218 kb on - strand, within OKFHMN_09335at 1756.323 kb on + strand, within OKFHMN_09335at 1756.323 kb on + strand, within OKFHMN_09335at 1756.377 kb on + strand, within OKFHMN_09335at 1756.378 kb on - strand, within OKFHMN_09335at 1756.446 kb on + strandat 1756.446 kb on + strandat 1756.446 kb on + strandat 1756.447 kb on - strandat 1756.453 kb on - strandat 1756.453 kb on - strandat 1756.568 kb on + strand, within OKFHMN_09340at 1756.569 kb on - strand, within OKFHMN_09340at 1756.601 kb on - strand, within OKFHMN_09340at 1756.639 kb on - strand, within OKFHMN_09340at 1756.694 kb on + strand, within OKFHMN_09340at 1756.695 kb on - strand, within OKFHMN_09340at 1756.854 kb on - strand, within OKFHMN_09340at 1756.856 kb on - strand, within OKFHMN_09340at 1756.889 kb on - strand, within OKFHMN_09340at 1756.920 kb on - strand, within OKFHMN_09340at 1756.983 kb on + strand, within OKFHMN_09340at 1756.983 kb on + strand, within OKFHMN_09340at 1757.030 kb on + strandat 1757.108 kb on + strand, within OKFHMN_09345at 1757.166 kb on - strand, within OKFHMN_09345at 1757.174 kb on - strand, within OKFHMN_09345at 1757.194 kb on + strand, within OKFHMN_09345at 1757.417 kb on + strandat 1757.417 kb on + strandat 1757.417 kb on + strandat 1757.419 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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1,754,816 + +0.6
1,754,881 + +0.1
1,755,046 - +0.3
1,755,048 + -2.0
1,755,072 + -0.6
1,755,560 + -0.6
1,755,608 + -1.2
1,755,700 + +0.2
1,755,701 - +0.5
1,755,701 - -1.4
1,755,701 - -1.3
1,755,738 - -0.0
1,755,886 - OKFHMN_09335 0.18 +0.4
1,755,984 - OKFHMN_09335 0.31 +0.2
1,756,124 - OKFHMN_09335 0.50 +0.3
1,756,182 + OKFHMN_09335 0.58 -0.3
1,756,218 - OKFHMN_09335 0.62 +0.9
1,756,323 + OKFHMN_09335 0.76 -1.0
1,756,323 + OKFHMN_09335 0.76 -0.6
1,756,377 + OKFHMN_09335 0.84 +0.7
1,756,378 - OKFHMN_09335 0.84 -1.7
1,756,446 + +0.7
1,756,446 + -0.2
1,756,446 + -0.2
1,756,447 - -0.2
1,756,453 - +0.3
1,756,453 - +1.4
1,756,568 + OKFHMN_09340 0.13 +0.7
1,756,569 - OKFHMN_09340 0.13 -1.3
1,756,601 - OKFHMN_09340 0.19 +0.5
1,756,639 - OKFHMN_09340 0.26 -1.0
1,756,694 + OKFHMN_09340 0.36 +1.0
1,756,695 - OKFHMN_09340 0.36 +0.4
1,756,854 - OKFHMN_09340 0.65 +0.2
1,756,856 - OKFHMN_09340 0.65 -0.2
1,756,889 - OKFHMN_09340 0.71 -0.2
1,756,920 - OKFHMN_09340 0.77 +0.3
1,756,983 + OKFHMN_09340 0.88 +0.1
1,756,983 + OKFHMN_09340 0.88 +0.1
1,757,030 + +0.9
1,757,108 + OKFHMN_09345 0.20 -0.2
1,757,166 - OKFHMN_09345 0.41 -0.2
1,757,174 - OKFHMN_09345 0.44 +0.1
1,757,194 + OKFHMN_09345 0.51 +0.1
1,757,417 + +1.2
1,757,417 + -0.2
1,757,417 + +1.7
1,757,419 + -0.4

Or see this region's nucleotide sequence