Strain Fitness in Escherichia coli ECRC100 around OKFHMN_08445

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntthiL and nusB are separated by 77 nucleotidesnusB and ribE are separated by 19 nucleotidesribE and ribD are separated by 88 nucleotides OKFHMN_08440: thiL - thiamine-phosphate kinase, at 1,572,137 to 1,573,114 thiL OKFHMN_08445: nusB - transcription antitermination factor NusB, at 1,573,192 to 1,573,611 nusB OKFHMN_08450: ribE - 6,7-dimethyl-8-ribityllumazine synthase, at 1,573,631 to 1,574,101 ribE OKFHMN_08455: ribD - bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD, at 1,574,190 to 1,575,293 ribD Position (kb) 1573 1574Strain fitness (log2 ratio) -1 0 1at 1573.179 kb on - strandat 1573.194 kb on - strandat 1574.156 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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1,573,179 - -0.9
1,573,194 - -1.5
1,574,156 - +0.2

Or see this region's nucleotide sequence