Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ahpC and dsbG are separated by 371 nucleotides dsbG and ybdO are separated by 209 nucleotides
OKFHMN_07510: ahpC - alkyl hydroperoxide reductase subunit C, at 1,352,324 to 1,352,887
ahpC
OKFHMN_07515: dsbG - thiol:disulfide interchange protein DsbG, at 1,353,259 to 1,354,005
dsbG
OKFHMN_07520: ybdO - Uncharacterized HTH-type transcriptional regulator YbdO, at 1,354,215 to 1,355,117
ybdO
Position (kb) 1353
1354
1355 Strain fitness (log2 ratio) -2
-1
0
1 at 1352.305 kb on - strand at 1352.415 kb on - strand, within ahpC at 1352.419 kb on - strand, within ahpC at 1352.608 kb on - strand, within ahpC at 1352.676 kb on - strand, within ahpC at 1352.683 kb on - strand, within ahpC at 1352.684 kb on + strand, within ahpC at 1352.759 kb on - strand, within ahpC at 1352.804 kb on - strand, within ahpC at 1352.890 kb on - strand at 1352.919 kb on - strand at 1352.919 kb on - strand at 1352.972 kb on - strand at 1352.983 kb on + strand at 1353.067 kb on + strand at 1353.077 kb on + strand at 1353.077 kb on + strand at 1353.125 kb on + strand at 1353.126 kb on - strand at 1353.126 kb on - strand at 1353.149 kb on + strand at 1353.149 kb on + strand at 1353.194 kb on + strand at 1353.354 kb on + strand, within dsbG at 1353.355 kb on - strand, within dsbG at 1353.397 kb on + strand, within dsbG at 1353.433 kb on + strand, within dsbG at 1353.469 kb on + strand, within dsbG at 1353.613 kb on + strand, within dsbG at 1353.614 kb on - strand, within dsbG at 1353.614 kb on - strand, within dsbG at 1353.692 kb on + strand, within dsbG at 1353.822 kb on - strand, within dsbG at 1353.840 kb on - strand, within dsbG at 1353.844 kb on - strand, within dsbG at 1353.916 kb on - strand, within dsbG at 1353.920 kb on - strand, within dsbG at 1353.920 kb on - strand, within dsbG at 1353.922 kb on + strand, within dsbG at 1354.317 kb on + strand, within ybdO at 1354.357 kb on + strand, within ybdO at 1354.518 kb on - strand, within ybdO at 1354.553 kb on + strand, within ybdO at 1354.942 kb on + strand, within ybdO
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 1,352,305 - -0.4 1,352,415 - ahpC OKFHMN_07510 0.16 -0.4 1,352,419 - ahpC OKFHMN_07510 0.17 -0.4 1,352,608 - ahpC OKFHMN_07510 0.50 -0.3 1,352,676 - ahpC OKFHMN_07510 0.62 -2.1 1,352,683 - ahpC OKFHMN_07510 0.64 -0.5 1,352,684 + ahpC OKFHMN_07510 0.64 -1.4 1,352,759 - ahpC OKFHMN_07510 0.77 -1.0 1,352,804 - ahpC OKFHMN_07510 0.85 -0.5 1,352,890 - +0.3 1,352,919 - +0.6 1,352,919 - +0.4 1,352,972 - -0.0 1,352,983 + -1.1 1,353,067 + -0.2 1,353,077 + -1.0 1,353,077 + +0.6 1,353,125 + -0.6 1,353,126 - +0.2 1,353,126 - +0.6 1,353,149 + +0.2 1,353,149 + +0.6 1,353,194 + -0.5 1,353,354 + dsbG OKFHMN_07515 0.13 -0.1 1,353,355 - dsbG OKFHMN_07515 0.13 +0.2 1,353,397 + dsbG OKFHMN_07515 0.18 -1.4 1,353,433 + dsbG OKFHMN_07515 0.23 +0.6 1,353,469 + dsbG OKFHMN_07515 0.28 -0.1 1,353,613 + dsbG OKFHMN_07515 0.47 +0.5 1,353,614 - dsbG OKFHMN_07515 0.48 +0.1 1,353,614 - dsbG OKFHMN_07515 0.48 +0.2 1,353,692 + dsbG OKFHMN_07515 0.58 -1.0 1,353,822 - dsbG OKFHMN_07515 0.75 +0.7 1,353,840 - dsbG OKFHMN_07515 0.78 -0.5 1,353,844 - dsbG OKFHMN_07515 0.78 +0.2 1,353,916 - dsbG OKFHMN_07515 0.88 +0.8 1,353,920 - dsbG OKFHMN_07515 0.88 +0.9 1,353,920 - dsbG OKFHMN_07515 0.88 -0.0 1,353,922 + dsbG OKFHMN_07515 0.89 -0.0 1,354,317 + ybdO OKFHMN_07520 0.11 +0.2 1,354,357 + ybdO OKFHMN_07520 0.16 -1.5 1,354,518 - ybdO OKFHMN_07520 0.34 +1.2 1,354,553 + ybdO OKFHMN_07520 0.37 +0.9 1,354,942 + ybdO OKFHMN_07520 0.81 +0.5
Or see this region's nucleotide sequence