Strain Fitness in Escherichia coli ECRC100 around OKFHMN_07035

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntphrB and ybgA overlap by 4 nucleotidesybgA and tnp-ISAs1 are separated by 148 nucleotidestnp-ISAs1 and OKFHMN_07040 are separated by 3 nucleotides OKFHMN_07025: phrB - deoxyribodipyrimidine photo-lyase, at 1,255,733 to 1,257,151 phrB OKFHMN_07030: ybgA - DUF1722 domain-containing protein, at 1,257,148 to 1,257,657 ybgA OKFHMN_07035: tnp-ISAs1 - ISAs1 family transposase, at 1,257,806 to 1,258,879 tnp-ISAs1 OKFHMN_07040: OKFHMN_07040 - Bacteriophage N4 adsorption protein B, at 1,258,883 to 1,258,942 _07040 Position (kb) 1257 1258 1259Strain fitness (log2 ratio) -3 -2 -1 0 1at 1256.836 kb on - strand, within phrBat 1256.842 kb on - strand, within phrBat 1256.846 kb on - strand, within phrBat 1256.846 kb on - strand, within phrBat 1256.847 kb on + strand, within phrBat 1256.847 kb on + strand, within phrBat 1257.013 kb on + strandat 1257.048 kb on + strandat 1257.049 kb on - strandat 1257.049 kb on - strandat 1257.049 kb on - strandat 1257.116 kb on + strandat 1257.117 kb on - strandat 1257.151 kb on + strandat 1257.151 kb on + strandat 1257.152 kb on - strandat 1257.152 kb on - strandat 1257.224 kb on + strand, within ybgAat 1257.224 kb on + strand, within ybgAat 1257.240 kb on + strand, within ybgAat 1257.241 kb on - strand, within ybgAat 1257.243 kb on - strand, within ybgAat 1257.243 kb on - strand, within ybgAat 1257.691 kb on - strandat 1259.240 kb on + strandat 1259.720 kb on + strandat 1259.823 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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1,256,836 - phrB OKFHMN_07025 0.78 -3.2
1,256,842 - phrB OKFHMN_07025 0.78 +0.7
1,256,846 - phrB OKFHMN_07025 0.78 -0.2
1,256,846 - phrB OKFHMN_07025 0.78 -0.4
1,256,847 + phrB OKFHMN_07025 0.79 +0.8
1,256,847 + phrB OKFHMN_07025 0.79 -1.3
1,257,013 + +1.1
1,257,048 + +0.6
1,257,049 - -0.3
1,257,049 - +1.3
1,257,049 - -1.4
1,257,116 + +1.0
1,257,117 - -0.1
1,257,151 + -1.6
1,257,151 + +1.7
1,257,152 - -1.2
1,257,152 - +0.4
1,257,224 + ybgA OKFHMN_07030 0.15 +0.0
1,257,224 + ybgA OKFHMN_07030 0.15 +0.6
1,257,240 + ybgA OKFHMN_07030 0.18 -0.0
1,257,241 - ybgA OKFHMN_07030 0.18 -0.0
1,257,243 - ybgA OKFHMN_07030 0.19 +1.0
1,257,243 - ybgA OKFHMN_07030 0.19 -1.4
1,257,691 - +0.2
1,259,240 + -0.4
1,259,720 + +0.9
1,259,823 + -0.4

Or see this region's nucleotide sequence