Strain Fitness in Escherichia coli ECRC100 around OKFHMN_06565

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKFHMN_06550 and OKFHMN_06555 overlap by 13 nucleotidesOKFHMN_06555 and rrrD overlap by 4 nucleotidesrrrD and OKFHMN_06565 overlap by 1 nucleotidesOKFHMN_06565 and OKFHMN_06570 are separated by 621 nucleotidesOKFHMN_06570 and OKFHMN_06575 are separated by 99 nucleotidesOKFHMN_06575 and OKFHMN_06580 overlap by 62 nucleotides OKFHMN_06550: OKFHMN_06550 - Putative bacteriophage protein (Gene 65), at 1,170,152 to 1,170,304 _06550 OKFHMN_06555: OKFHMN_06555 - lysis protein, at 1,170,292 to 1,170,759 _06555 OKFHMN_06560: rrrD - lysozyme RrrD, at 1,170,756 to 1,171,253 rrrD OKFHMN_06565: OKFHMN_06565 - holin, at 1,171,253 to 1,171,468 _06565 OKFHMN_06570: OKFHMN_06570 - DUF3927 domain-containing protein, at 1,172,090 to 1,172,170 _06570 OKFHMN_06575: OKFHMN_06575 - hypothetical protein, at 1,172,270 to 1,172,395 _06575 OKFHMN_06580: OKFHMN_06580 - Membrane protein, at 1,172,334 to 1,173,077 _06580 Position (kb) 1171 1172Strain fitness (log2 ratio) -2 -1 0 1 2at 1170.278 kb on + strand, within OKFHMN_06550at 1170.318 kb on - strandat 1170.499 kb on - strand, within OKFHMN_06555at 1170.562 kb on - strand, within OKFHMN_06555at 1171.135 kb on - strand, within rrrDat 1171.299 kb on + strand, within OKFHMN_06565at 1171.465 kb on - strandat 1171.541 kb on + strandat 1171.551 kb on - strandat 1171.551 kb on - strandat 1171.564 kb on + strandat 1171.565 kb on - strandat 1171.576 kb on + strandat 1171.590 kb on - strandat 1171.590 kb on - strandat 1171.593 kb on + strandat 1171.593 kb on + strandat 1171.616 kb on - strandat 1171.616 kb on - strandat 1171.619 kb on + strandat 1171.619 kb on + strandat 1171.712 kb on + strandat 1171.733 kb on + strandat 1171.746 kb on + strandat 1171.948 kb on + strandat 1171.968 kb on - strandat 1171.998 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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1,170,278 + OKFHMN_06550 0.82 -0.7
1,170,318 - +0.1
1,170,499 - OKFHMN_06555 0.44 +1.1
1,170,562 - OKFHMN_06555 0.58 +0.3
1,171,135 - rrrD OKFHMN_06560 0.76 -1.2
1,171,299 + OKFHMN_06565 0.21 +1.0
1,171,465 - +0.4
1,171,541 + +2.2
1,171,551 - +0.6
1,171,551 - -1.4
1,171,564 + -1.0
1,171,565 - +0.7
1,171,576 + -0.1
1,171,590 - +1.4
1,171,590 - -0.0
1,171,593 + +0.1
1,171,593 + +0.1
1,171,616 - +0.8
1,171,616 - +0.5
1,171,619 + +0.2
1,171,619 + +0.7
1,171,712 + +0.8
1,171,733 + -0.8
1,171,746 + +0.3
1,171,948 + -0.8
1,171,968 - -0.2
1,171,998 - -2.5

Or see this region's nucleotide sequence