Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKFHMN_06550 and OKFHMN_06555 overlap by 13 nucleotides OKFHMN_06555 and rrrD overlap by 4 nucleotides rrrD and OKFHMN_06565 overlap by 1 nucleotides OKFHMN_06565 and OKFHMN_06570 are separated by 621 nucleotides OKFHMN_06570 and OKFHMN_06575 are separated by 99 nucleotides OKFHMN_06575 and OKFHMN_06580 overlap by 62 nucleotides
OKFHMN_06550: OKFHMN_06550 - Putative bacteriophage protein (Gene 65), at 1,170,152 to 1,170,304
_06550
OKFHMN_06555: OKFHMN_06555 - lysis protein, at 1,170,292 to 1,170,759
_06555
OKFHMN_06560: rrrD - lysozyme RrrD, at 1,170,756 to 1,171,253
rrrD
OKFHMN_06565: OKFHMN_06565 - holin, at 1,171,253 to 1,171,468
_06565
OKFHMN_06570: OKFHMN_06570 - DUF3927 domain-containing protein, at 1,172,090 to 1,172,170
_06570
OKFHMN_06575: OKFHMN_06575 - hypothetical protein, at 1,172,270 to 1,172,395
_06575
OKFHMN_06580: OKFHMN_06580 - Membrane protein, at 1,172,334 to 1,173,077
_06580
Position (kb)
1171
1172 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1170.278 kb on + strand, within OKFHMN_06550 at 1170.318 kb on - strand at 1170.499 kb on - strand, within OKFHMN_06555 at 1170.562 kb on - strand, within OKFHMN_06555 at 1171.135 kb on - strand, within rrrD at 1171.299 kb on + strand, within OKFHMN_06565 at 1171.465 kb on - strand at 1171.541 kb on + strand at 1171.551 kb on - strand at 1171.551 kb on - strand at 1171.564 kb on + strand at 1171.565 kb on - strand at 1171.576 kb on + strand at 1171.590 kb on - strand at 1171.590 kb on - strand at 1171.593 kb on + strand at 1171.593 kb on + strand at 1171.616 kb on - strand at 1171.616 kb on - strand at 1171.619 kb on + strand at 1171.619 kb on + strand at 1171.712 kb on + strand at 1171.733 kb on + strand at 1171.746 kb on + strand at 1171.948 kb on + strand at 1171.968 kb on - strand at 1171.998 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 1,170,278 + OKFHMN_06550 0.82 -0.7 1,170,318 - +0.1 1,170,499 - OKFHMN_06555 0.44 +1.1 1,170,562 - OKFHMN_06555 0.58 +0.3 1,171,135 - rrrD OKFHMN_06560 0.76 -1.2 1,171,299 + OKFHMN_06565 0.21 +1.0 1,171,465 - +0.4 1,171,541 + +2.2 1,171,551 - +0.6 1,171,551 - -1.4 1,171,564 + -1.0 1,171,565 - +0.7 1,171,576 + -0.1 1,171,590 - +1.4 1,171,590 - -0.0 1,171,593 + +0.1 1,171,593 + +0.1 1,171,616 - +0.8 1,171,616 - +0.5 1,171,619 + +0.2 1,171,619 + +0.7 1,171,712 + +0.8 1,171,733 + -0.8 1,171,746 + +0.3 1,171,948 + -0.8 1,171,968 - -0.2 1,171,998 - -2.5
Or see this region's nucleotide sequence