Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKFHMN_05905 and artJ are separated by 153 nucleotides artJ and aslA are separated by 50 nucleotides aslA and sgaB are separated by 11 nucleotides sgaB and ulaA are separated by 21 nucleotides
OKFHMN_05905: OKFHMN_05905 - hypothetical protein, at 1,043,811 to 1,043,948
_05905
OKFHMN_05915: artJ - ABC transporter substrate-binding protein ArtJ, at 1,044,102 to 1,044,833
artJ
OKFHMN_05920: aslA - sulfatase, at 1,044,884 to 1,046,365
aslA
OKFHMN_05925: sgaB - PTS sugar transporter IIB, at 1,046,377 to 1,046,697
sgaB
OKFHMN_05930: ulaA - PTS sugar transporter subunit IIC, at 1,046,719 to 1,048,044
ulaA
Position (kb) 1044
1045
1046
1047 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 1043.947 kb on - strand at 1044.070 kb on + strand at 1044.076 kb on + strand at 1044.193 kb on - strand, within artJ at 1044.411 kb on + strand, within artJ at 1044.454 kb on - strand, within artJ at 1044.614 kb on - strand, within artJ at 1044.831 kb on + strand at 1044.996 kb on - strand at 1045.057 kb on - strand, within aslA at 1045.080 kb on - strand, within aslA at 1045.080 kb on - strand, within aslA at 1045.083 kb on - strand, within aslA at 1045.183 kb on - strand, within aslA at 1045.192 kb on + strand, within aslA at 1045.227 kb on + strand, within aslA at 1045.228 kb on - strand, within aslA at 1045.228 kb on - strand, within aslA at 1045.228 kb on - strand, within aslA at 1045.233 kb on + strand, within aslA at 1045.234 kb on - strand, within aslA at 1045.248 kb on - strand, within aslA at 1045.248 kb on - strand, within aslA at 1045.248 kb on - strand, within aslA at 1045.428 kb on - strand, within aslA at 1045.428 kb on - strand, within aslA at 1045.451 kb on - strand, within aslA at 1045.482 kb on + strand, within aslA at 1045.483 kb on - strand, within aslA at 1045.721 kb on - strand, within aslA at 1045.882 kb on + strand, within aslA at 1045.885 kb on - strand, within aslA at 1045.885 kb on - strand, within aslA at 1046.103 kb on + strand, within aslA at 1046.104 kb on - strand, within aslA at 1046.183 kb on - strand, within aslA at 1046.183 kb on - strand, within aslA at 1046.228 kb on - strand at 1046.285 kb on - strand at 1046.390 kb on - strand at 1046.578 kb on - strand, within sgaB at 1046.883 kb on + strand, within ulaA at 1046.974 kb on + strand, within ulaA at 1047.210 kb on + strand, within ulaA at 1047.212 kb on + strand, within ulaA at 1047.246 kb on - strand, within ulaA at 1047.251 kb on + strand, within ulaA
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 1,043,947 - +0.9 1,044,070 + +0.9 1,044,076 + -2.3 1,044,193 - artJ OKFHMN_05915 0.12 -2.1 1,044,411 + artJ OKFHMN_05915 0.42 +0.0 1,044,454 - artJ OKFHMN_05915 0.48 +0.7 1,044,614 - artJ OKFHMN_05915 0.70 +1.8 1,044,831 + -0.3 1,044,996 - -0.8 1,045,057 - aslA OKFHMN_05920 0.12 -1.4 1,045,080 - aslA OKFHMN_05920 0.13 -0.0 1,045,080 - aslA OKFHMN_05920 0.13 +1.3 1,045,083 - aslA OKFHMN_05920 0.13 -3.0 1,045,183 - aslA OKFHMN_05920 0.20 +0.2 1,045,192 + aslA OKFHMN_05920 0.21 +1.2 1,045,227 + aslA OKFHMN_05920 0.23 -1.3 1,045,228 - aslA OKFHMN_05920 0.23 -1.4 1,045,228 - aslA OKFHMN_05920 0.23 -0.5 1,045,228 - aslA OKFHMN_05920 0.23 -1.0 1,045,233 + aslA OKFHMN_05920 0.24 -3.3 1,045,234 - aslA OKFHMN_05920 0.24 +0.7 1,045,248 - aslA OKFHMN_05920 0.25 +0.9 1,045,248 - aslA OKFHMN_05920 0.25 +0.2 1,045,248 - aslA OKFHMN_05920 0.25 +0.5 1,045,428 - aslA OKFHMN_05920 0.37 -0.2 1,045,428 - aslA OKFHMN_05920 0.37 +0.9 1,045,451 - aslA OKFHMN_05920 0.38 -0.7 1,045,482 + aslA OKFHMN_05920 0.40 -2.3 1,045,483 - aslA OKFHMN_05920 0.40 +0.8 1,045,721 - aslA OKFHMN_05920 0.56 +0.8 1,045,882 + aslA OKFHMN_05920 0.67 +1.0 1,045,885 - aslA OKFHMN_05920 0.68 -0.1 1,045,885 - aslA OKFHMN_05920 0.68 -2.6 1,046,103 + aslA OKFHMN_05920 0.82 +0.6 1,046,104 - aslA OKFHMN_05920 0.82 +1.4 1,046,183 - aslA OKFHMN_05920 0.88 +0.4 1,046,183 - aslA OKFHMN_05920 0.88 -4.0 1,046,228 - +1.0 1,046,285 - -0.9 1,046,390 - +1.9 1,046,578 - sgaB OKFHMN_05925 0.63 -1.1 1,046,883 + ulaA OKFHMN_05930 0.12 -0.1 1,046,974 + ulaA OKFHMN_05930 0.19 -0.1 1,047,210 + ulaA OKFHMN_05930 0.37 +0.2 1,047,212 + ulaA OKFHMN_05930 0.37 +0.7 1,047,246 - ulaA OKFHMN_05930 0.40 -0.0 1,047,251 + ulaA OKFHMN_05930 0.40 -1.1
Or see this region's nucleotide sequence