Strain Fitness in Escherichia coli ECRC100 around OKFHMN_05215

Experiment: L-Arabinose

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 nthelD and yccF are separated by 122 nucleotidesyccF and yccS are separated by 9 nucleotides OKFHMN_05210: helD - DNA helicase IV, at 860,172 to 862,226 helD OKFHMN_05215: yccF - YccF domain-containing protein, at 862,349 to 862,795 yccF OKFHMN_05220: yccS - Inner membrane protein YccS, at 862,805 to 864,967 yccS Position (kb) 862 863Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 861.384 kb on - strand, within helDat 861.429 kb on - strand, within helDat 861.698 kb on - strand, within helDat 862.178 kb on - strandat 862.448 kb on - strand, within yccFat 862.517 kb on - strand, within yccFat 862.517 kb on - strand, within yccFat 862.801 kb on + strandat 862.818 kb on + strandat 862.838 kb on + strandat 862.839 kb on - strandat 862.927 kb on - strandat 863.186 kb on + strand, within yccSat 863.186 kb on + strand, within yccSat 863.187 kb on - strand, within yccSat 863.211 kb on - strand, within yccSat 863.279 kb on - strand, within yccSat 863.333 kb on + strand, within yccSat 863.333 kb on + strand, within yccSat 863.488 kb on - strand, within yccSat 863.535 kb on - strand, within yccSat 863.743 kb on + strand, within yccSat 863.743 kb on + strand, within yccS

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
remove
861,384 - helD OKFHMN_05210 0.59 +0.1
861,429 - helD OKFHMN_05210 0.61 +0.1
861,698 - helD OKFHMN_05210 0.74 -0.2
862,178 - -3.0
862,448 - yccF OKFHMN_05215 0.22 -0.9
862,517 - yccF OKFHMN_05215 0.38 -4.0
862,517 - yccF OKFHMN_05215 0.38 -0.2
862,801 + +1.1
862,818 + +1.7
862,838 + +1.1
862,839 - -2.1
862,927 - -4.5
863,186 + yccS OKFHMN_05220 0.18 +0.8
863,186 + yccS OKFHMN_05220 0.18 -1.3
863,187 - yccS OKFHMN_05220 0.18 +0.6
863,211 - yccS OKFHMN_05220 0.19 +0.5
863,279 - yccS OKFHMN_05220 0.22 -1.5
863,333 + yccS OKFHMN_05220 0.24 +1.0
863,333 + yccS OKFHMN_05220 0.24 +0.8
863,488 - yccS OKFHMN_05220 0.32 -0.3
863,535 - yccS OKFHMN_05220 0.34 -0.5
863,743 + yccS OKFHMN_05220 0.43 +1.4
863,743 + yccS OKFHMN_05220 0.43 -0.5

Or see this region's nucleotide sequence