Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ydfA and ydfB are separated by 1 nucleotides ydfB and OKFHMN_05125 are separated by 11 nucleotides OKFHMN_05125 and OKFHMN_05130 are separated by 186 nucleotides OKFHMN_05130 and OKFHMN_05140 are separated by 573 nucleotides OKFHMN_05140 and OKFHMN_05145 overlap by 4 nucleotides
OKFHMN_05115: ydfA - Uncharacterized protein YdfA, at 848,991 to 849,146
ydfA
OKFHMN_05120: ydfB - Uncharacterized protein YdfB, at 849,148 to 849,276
ydfB
OKFHMN_05125: OKFHMN_05125 - hypothetical protein, at 849,288 to 849,677
_05125
OKFHMN_05130: OKFHMN_05130 - hypothetical protein, at 849,864 to 850,049
_05130
OKFHMN_05140: OKFHMN_05140 - cell division inhibition protein DicB, at 850,623 to 850,811
_05140
OKFHMN_05145: OKFHMN_05145 - DUF1482 domain-containing protein, at 850,808 to 850,999
_05145
Position (kb) 849
850
851 Strain fitness (log2 ratio) -2
-1
0
1
2 at 848.931 kb on + strand at 848.938 kb on + strand at 848.938 kb on + strand at 848.938 kb on + strand at 849.388 kb on - strand, within OKFHMN_05125 at 849.522 kb on + strand, within OKFHMN_05125 at 850.148 kb on - strand at 850.215 kb on + strand at 850.640 kb on + strand at 850.813 kb on + strand at 850.813 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 848,931 + -1.5 848,938 + +1.1 848,938 + +0.5 848,938 + +0.3 849,388 - OKFHMN_05125 0.26 -1.8 849,522 + OKFHMN_05125 0.60 +1.8 850,148 - +0.2 850,215 + +2.2 850,640 + -0.3 850,813 + -0.2 850,813 + +1.9
Or see this region's nucleotide sequence