Strain Fitness in Escherichia coli ECRC100 around OKFHMN_04700

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntcbpM and torD are separated by 153 nucleotidestorD and torA overlap by 4 nucleotidestorA and torC overlap by 1 nucleotides OKFHMN_04685: cbpM - chaperone modulator CbpM, at 774,816 to 775,121 cbpM OKFHMN_04695: torD - molecular chaperone TorD, at 775,275 to 775,874 torD OKFHMN_04700: torA - trimethylamine-N-oxide reductase TorA, at 775,871 to 778,417 torA OKFHMN_04705: torC - pentaheme c-type cytochrome TorC, at 778,417 to 779,589 torC Position (kb) 775 776 777 778 779Strain fitness (log2 ratio) -3 -2 -1 0 1at 775.109 kb on - strandat 775.303 kb on - strandat 775.303 kb on - strandat 775.314 kb on + strandat 775.585 kb on + strand, within torDat 775.677 kb on + strand, within torDat 775.849 kb on - strandat 776.272 kb on + strand, within torAat 776.275 kb on - strand, within torAat 776.356 kb on - strand, within torAat 776.695 kb on + strand, within torAat 777.027 kb on - strand, within torAat 777.093 kb on + strand, within torAat 777.501 kb on + strand, within torAat 777.585 kb on + strand, within torAat 777.585 kb on + strand, within torAat 777.620 kb on - strand, within torAat 777.675 kb on + strand, within torAat 777.676 kb on - strand, within torAat 777.872 kb on - strand, within torAat 777.875 kb on - strand, within torAat 778.103 kb on + strand, within torAat 778.177 kb on + strandat 778.178 kb on - strandat 778.482 kb on - strandat 778.522 kb on - strandat 778.795 kb on - strand, within torCat 778.959 kb on + strand, within torCat 779.061 kb on + strand, within torCat 779.062 kb on - strand, within torCat 779.159 kb on + strand, within torCat 779.159 kb on + strand, within torCat 779.159 kb on + strand, within torCat 779.160 kb on - strand, within torCat 779.406 kb on + strand, within torCat 779.417 kb on + strand, within torC

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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775,109 - +1.1
775,303 - -2.4
775,303 - -0.3
775,314 + -1.7
775,585 + torD OKFHMN_04695 0.52 -0.2
775,677 + torD OKFHMN_04695 0.67 +0.7
775,849 - -0.8
776,272 + torA OKFHMN_04700 0.16 +0.3
776,275 - torA OKFHMN_04700 0.16 +0.5
776,356 - torA OKFHMN_04700 0.19 -0.4
776,695 + torA OKFHMN_04700 0.32 +0.5
777,027 - torA OKFHMN_04700 0.45 -1.6
777,093 + torA OKFHMN_04700 0.48 +0.1
777,501 + torA OKFHMN_04700 0.64 -1.8
777,585 + torA OKFHMN_04700 0.67 +0.3
777,585 + torA OKFHMN_04700 0.67 +0.5
777,620 - torA OKFHMN_04700 0.69 -0.3
777,675 + torA OKFHMN_04700 0.71 +0.1
777,676 - torA OKFHMN_04700 0.71 +0.3
777,872 - torA OKFHMN_04700 0.79 -1.4
777,875 - torA OKFHMN_04700 0.79 +0.8
778,103 + torA OKFHMN_04700 0.88 -0.3
778,177 + +0.6
778,178 - +0.5
778,482 - -1.8
778,522 - -0.3
778,795 - torC OKFHMN_04705 0.32 +0.3
778,959 + torC OKFHMN_04705 0.46 -0.9
779,061 + torC OKFHMN_04705 0.55 -0.3
779,062 - torC OKFHMN_04705 0.55 -2.6
779,159 + torC OKFHMN_04705 0.63 +0.3
779,159 + torC OKFHMN_04705 0.63 +1.7
779,159 + torC OKFHMN_04705 0.63 -0.1
779,160 - torC OKFHMN_04705 0.63 -3.6
779,406 + torC OKFHMN_04705 0.84 +0.5
779,417 + torC OKFHMN_04705 0.85 +0.0

Or see this region's nucleotide sequence