Strain Fitness in Escherichia coli ECRC100 around OKFHMN_04680

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKFHMN_04675 and cbpA are separated by 259 nucleotidescbpA and cbpM overlap by 1 nucleotidescbpM and torD are separated by 153 nucleotides OKFHMN_04675: OKFHMN_04675 - YccE, at 772,737 to 773,636 _04675 OKFHMN_04680: cbpA - curved DNA-binding protein, at 773,896 to 774,816 cbpA OKFHMN_04685: cbpM - chaperone modulator CbpM, at 774,816 to 775,121 cbpM OKFHMN_04695: torD - molecular chaperone TorD, at 775,275 to 775,874 torD Position (kb) 773 774 775Strain fitness (log2 ratio) -2 -1 0 1at 773.324 kb on - strand, within OKFHMN_04675at 773.831 kb on + strandat 773.837 kb on + strandat 773.837 kb on + strandat 773.989 kb on + strand, within cbpAat 773.990 kb on - strand, within cbpAat 774.163 kb on - strand, within cbpAat 774.316 kb on + strand, within cbpAat 774.573 kb on + strand, within cbpAat 774.814 kb on + strandat 774.827 kb on + strandat 774.839 kb on + strandat 774.842 kb on + strandat 775.109 kb on - strandat 775.303 kb on - strandat 775.303 kb on - strandat 775.314 kb on + strandat 775.585 kb on + strand, within torDat 775.677 kb on + strand, within torD

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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773,324 - OKFHMN_04675 0.65 +0.2
773,831 + +0.0
773,837 + -1.3
773,837 + +1.0
773,989 + cbpA OKFHMN_04680 0.10 -0.5
773,990 - cbpA OKFHMN_04680 0.10 +1.3
774,163 - cbpA OKFHMN_04680 0.29 -0.4
774,316 + cbpA OKFHMN_04680 0.46 -0.5
774,573 + cbpA OKFHMN_04680 0.74 -0.9
774,814 + -0.3
774,827 + +0.1
774,839 + +0.2
774,842 + -0.7
775,109 - +1.1
775,303 - -2.4
775,303 - -0.3
775,314 + -1.7
775,585 + torD OKFHMN_04695 0.52 -0.2
775,677 + torD OKFHMN_04695 0.67 +0.7

Or see this region's nucleotide sequence