Strain Fitness in Escherichia coli ECRC100 around OKFHMN_04675

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntagp and OKFHMN_04670 are separated by 290 nucleotidesOKFHMN_04670 and OKFHMN_04675 are separated by 109 nucleotidesOKFHMN_04675 and cbpA are separated by 259 nucleotides OKFHMN_04665: agp - bifunctional glucose-1-phosphatase/inositol phosphatase, at 770,847 to 772,088 agp OKFHMN_04670: OKFHMN_04670 - YccE, at 772,379 to 772,627 _04670 OKFHMN_04675: OKFHMN_04675 - YccE, at 772,737 to 773,636 _04675 OKFHMN_04680: cbpA - curved DNA-binding protein, at 773,896 to 774,816 cbpA Position (kb) 772 773 774Strain fitness (log2 ratio) -1 0 1at 771.761 kb on - strand, within agpat 771.801 kb on + strand, within agpat 771.835 kb on + strand, within agpat 771.848 kb on - strand, within agpat 771.848 kb on - strand, within agpat 772.190 kb on - strandat 773.324 kb on - strand, within OKFHMN_04675at 773.831 kb on + strandat 773.837 kb on + strandat 773.837 kb on + strandat 773.989 kb on + strand, within cbpAat 773.990 kb on - strand, within cbpAat 774.163 kb on - strand, within cbpAat 774.316 kb on + strand, within cbpAat 774.573 kb on + strand, within cbpA

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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771,761 - agp OKFHMN_04665 0.74 +0.0
771,801 + agp OKFHMN_04665 0.77 +0.6
771,835 + agp OKFHMN_04665 0.80 -0.5
771,848 - agp OKFHMN_04665 0.81 +0.3
771,848 - agp OKFHMN_04665 0.81 +0.7
772,190 - +1.1
773,324 - OKFHMN_04675 0.65 +0.2
773,831 + +0.0
773,837 + -1.3
773,837 + +1.0
773,989 + cbpA OKFHMN_04680 0.10 -0.5
773,990 - cbpA OKFHMN_04680 0.10 +1.3
774,163 - cbpA OKFHMN_04680 0.29 -0.4
774,316 + cbpA OKFHMN_04680 0.46 -0.5
774,573 + cbpA OKFHMN_04680 0.74 -0.9

Or see this region's nucleotide sequence