Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rutG and OKFHMN_04650 are separated by 82 nucleotides OKFHMN_04650 and wrbA are separated by 371 nucleotides wrbA and yccJ are separated by 20 nucleotides
OKFHMN_04645: rutG - pyrimidine utilization transport protein G, at 768,075 to 769,403
rutG
OKFHMN_04650: OKFHMN_04650 - Stress-induced protein, KGG, repeat, at 769,486 to 769,593
_04650
OKFHMN_04655: wrbA - NAD(P)H:quinone oxidoreductase, at 769,965 to 770,561
wrbA
OKFHMN_04660: yccJ - Uncharacterized protein YccJ, at 770,582 to 770,809
yccJ
Position (kb) 769
770 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 768.865 kb on + strand, within rutG at 768.915 kb on + strand, within rutG at 768.915 kb on + strand, within rutG at 768.993 kb on + strand, within rutG at 769.005 kb on - strand, within rutG at 769.345 kb on + strand at 769.401 kb on + strand at 769.478 kb on + strand at 769.615 kb on - strand at 769.624 kb on - strand at 769.624 kb on - strand at 769.679 kb on - strand at 769.720 kb on - strand at 769.784 kb on - strand at 769.865 kb on + strand at 769.904 kb on - strand at 769.944 kb on + strand at 770.228 kb on + strand, within wrbA at 770.228 kb on + strand, within wrbA at 770.272 kb on + strand, within wrbA at 770.297 kb on + strand, within wrbA at 770.526 kb on + strand at 770.526 kb on + strand at 770.527 kb on - strand at 770.547 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 768,865 + rutG OKFHMN_04645 0.59 +1.3 768,915 + rutG OKFHMN_04645 0.63 +0.1 768,915 + rutG OKFHMN_04645 0.63 -1.8 768,993 + rutG OKFHMN_04645 0.69 +0.3 769,005 - rutG OKFHMN_04645 0.70 -0.5 769,345 + -1.4 769,401 + -0.4 769,478 + -1.4 769,615 - +0.6 769,624 - -1.2 769,624 - -1.0 769,679 - -2.9 769,720 - +0.5 769,784 - -0.9 769,865 + -1.3 769,904 - +0.1 769,944 + -0.6 770,228 + wrbA OKFHMN_04655 0.44 -1.2 770,228 + wrbA OKFHMN_04655 0.44 +0.6 770,272 + wrbA OKFHMN_04655 0.51 +0.4 770,297 + wrbA OKFHMN_04655 0.56 -0.1 770,526 + -0.5 770,526 + +0.0 770,527 - -2.0 770,547 - -0.3
Or see this region's nucleotide sequence