Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKFHMN_04170 and citE overlap by 1 nucleotides citE and OKFHMN_04180 are separated by 10 nucleotides OKFHMN_04180 and terW are separated by 17 nucleotides terW and OKFHMN_04190 are separated by 260 nucleotides
OKFHMN_04170: OKFHMN_04170 - Phosphoribosyl transferase (PRTase), at 668,225 to 669,304
_04170
OKFHMN_04175: citE - citrate lyase subunit beta, at 669,304 to 670,260
citE
OKFHMN_04180: OKFHMN_04180 - DUF4236 domain-containing protein, at 670,271 to 671,479
_04180
OKFHMN_04185: terW - tellurium resistance protein TerW, at 671,497 to 671,964
terW
OKFHMN_04190: OKFHMN_04190 - IS66 family insertion sequence hypothetical protein, at 672,225 to 672,554
_04190
Position (kb) 670
671
672 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 669.279 kb on + strand at 669.287 kb on - strand at 669.346 kb on + strand at 669.346 kb on + strand at 669.347 kb on - strand at 669.369 kb on + strand at 670.119 kb on + strand, within citE at 670.235 kb on + strand at 670.235 kb on + strand at 670.239 kb on + strand at 670.398 kb on - strand, within OKFHMN_04180 at 670.685 kb on + strand, within OKFHMN_04180 at 670.686 kb on - strand, within OKFHMN_04180 at 670.686 kb on - strand, within OKFHMN_04180 at 670.988 kb on + strand, within OKFHMN_04180 at 671.089 kb on - strand, within OKFHMN_04180 at 671.242 kb on + strand, within OKFHMN_04180 at 671.321 kb on + strand, within OKFHMN_04180 at 671.321 kb on + strand, within OKFHMN_04180 at 671.321 kb on + strand, within OKFHMN_04180 at 671.321 kb on + strand, within OKFHMN_04180 at 671.321 kb on + strand, within OKFHMN_04180 at 671.322 kb on - strand, within OKFHMN_04180 at 671.324 kb on - strand, within OKFHMN_04180 at 671.440 kb on + strand at 671.458 kb on + strand at 671.504 kb on + strand at 671.544 kb on - strand, within terW at 671.633 kb on + strand, within terW at 672.182 kb on + strand at 672.210 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 669,279 + -0.2 669,287 - +2.0 669,346 + -0.2 669,346 + -3.0 669,347 - -2.5 669,369 + +0.3 670,119 + citE OKFHMN_04175 0.85 -0.3 670,235 + +0.8 670,235 + +0.2 670,239 + -0.4 670,398 - OKFHMN_04180 0.11 +0.1 670,685 + OKFHMN_04180 0.34 +0.1 670,686 - OKFHMN_04180 0.34 +0.3 670,686 - OKFHMN_04180 0.34 +1.3 670,988 + OKFHMN_04180 0.59 -3.7 671,089 - OKFHMN_04180 0.68 +1.7 671,242 + OKFHMN_04180 0.80 -1.0 671,321 + OKFHMN_04180 0.87 +0.0 671,321 + OKFHMN_04180 0.87 -0.2 671,321 + OKFHMN_04180 0.87 -4.0 671,321 + OKFHMN_04180 0.87 -0.2 671,321 + OKFHMN_04180 0.87 -1.3 671,322 - OKFHMN_04180 0.87 -2.2 671,324 - OKFHMN_04180 0.87 -2.1 671,440 + -1.5 671,458 + -1.7 671,504 + -1.3 671,544 - terW OKFHMN_04185 0.10 -1.3 671,633 + terW OKFHMN_04185 0.29 +0.6 672,182 + +0.6 672,210 + -2.8
Or see this region's nucleotide sequence