Strain Fitness in Escherichia coli ECRC100 around OKFHMN_03930

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyeeS and OKFHMN_03925 are separated by 15 nucleotidesOKFHMN_03925 and OKFHMN_03930 are separated by 90 nucleotidesOKFHMN_03930 and OKFHMN_03935 are separated by 339 nucleotides OKFHMN_03920: yeeS - UPF0758 protein YeeS, at 622,418 to 622,894 yeeS OKFHMN_03925: OKFHMN_03925 - restriction endonuclease, at 622,910 to 623,395 _03925 OKFHMN_03930: OKFHMN_03930 - DUF945 domain-containing protein, at 623,486 to 624,304 _03930 OKFHMN_03935: OKFHMN_03935 - phospholipase, at 624,644 to 625,714 _03935 Position (kb) 623 624 625Strain fitness (log2 ratio) -1 0 1at 622.977 kb on + strand, within OKFHMN_03925at 622.996 kb on - strand, within OKFHMN_03925at 623.333 kb on - strand, within OKFHMN_03925at 623.401 kb on + strandat 623.409 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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622,977 + OKFHMN_03925 0.14 -1.0
622,996 - OKFHMN_03925 0.18 +0.8
623,333 - OKFHMN_03925 0.87 +0.4
623,401 + -0.7
623,409 - -1.6

Or see this region's nucleotide sequence