Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt pyrC and dinI are separated by 73 nucleotides dinI and bssS are separated by 289 nucleotides bssS and solA are separated by 114 nucleotides solA and yceO are separated by 47 nucleotides yceO and yceJ are separated by 260 nucleotides yceJ and yceI are separated by 3 nucleotides
OKFHMN_03730: pyrC - dihydroorotase, at 594,356 to 595,402
pyrC
OKFHMN_03735: dinI - DNA damage-inducible protein I, at 595,476 to 595,721
dinI
OKFHMN_03740: bssS - biofilm formation regulator BssS, at 596,011 to 596,265
bssS
OKFHMN_03745: solA - N-methyl-L-tryptophan oxidase, at 596,380 to 597,498
solA
OKFHMN_03750: yceO - Uncharacterized protein YceO, at 597,546 to 597,659
yceO
OKFHMN_03755: yceJ - Cytochrome b561-like protein, at 597,920 to 598,486
yceJ
OKFHMN_03760: yceI - YceI family protein, at 598,490 to 599,065
yceI
Position (kb) 596
597
598 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 595.426 kb on + strand at 595.475 kb on + strand at 595.723 kb on - strand at 595.823 kb on + strand at 595.824 kb on - strand at 595.934 kb on + strand at 596.076 kb on + strand, within bssS at 596.325 kb on + strand at 596.326 kb on - strand at 596.539 kb on + strand, within solA at 596.540 kb on - strand, within solA at 596.924 kb on + strand, within solA at 597.026 kb on + strand, within solA at 597.121 kb on + strand, within solA at 597.168 kb on + strand, within solA at 597.496 kb on + strand at 597.579 kb on - strand, within yceO at 597.630 kb on - strand, within yceO at 598.075 kb on + strand, within yceJ at 598.134 kb on + strand, within yceJ at 598.211 kb on + strand, within yceJ at 598.211 kb on + strand, within yceJ at 598.215 kb on + strand, within yceJ at 598.216 kb on - strand, within yceJ at 598.429 kb on + strand, within yceJ
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 595,426 + +0.8 595,475 + -0.1 595,723 - -0.2 595,823 + +1.4 595,824 - +1.1 595,934 + -1.8 596,076 + bssS OKFHMN_03740 0.25 -0.9 596,325 + +0.6 596,326 - -3.2 596,539 + solA OKFHMN_03745 0.14 +0.8 596,540 - solA OKFHMN_03745 0.14 +1.2 596,924 + solA OKFHMN_03745 0.49 +0.4 597,026 + solA OKFHMN_03745 0.58 +0.2 597,121 + solA OKFHMN_03745 0.66 +0.7 597,168 + solA OKFHMN_03745 0.70 -1.0 597,496 + +1.1 597,579 - yceO OKFHMN_03750 0.29 +1.3 597,630 - yceO OKFHMN_03750 0.74 +1.6 598,075 + yceJ OKFHMN_03755 0.27 -2.7 598,134 + yceJ OKFHMN_03755 0.38 -0.2 598,211 + yceJ OKFHMN_03755 0.51 +0.6 598,211 + yceJ OKFHMN_03755 0.51 +0.1 598,215 + yceJ OKFHMN_03755 0.52 -0.6 598,216 - yceJ OKFHMN_03755 0.52 +0.8 598,429 + yceJ OKFHMN_03755 0.90 -0.3
Or see this region's nucleotide sequence